These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [GTTCTATACTCGGGGCTCACTTTACCGCTCGGACTACCCGATGTGTATCCTTATGTATGAGAATCGCAGAAGTTCTCAGACCTATGTAGTTCAAGTATATAGGTACATGCAAAGGGTATGCATGCGATGTCTTATAAAGGAAACGTTGAGCTGCAAAAATGTCTGCCCTGTGTTTAATAAAATCAGCGGACTATCCATCAGGTCGAAGGCATAATAAAAATAGGTGGTAACAAATAGTACGGTGGGGCGACCAACAGCCTCCCCTGAAAGAGTGCTTATGCTTATGTGTGTCTCAGGGAATACAAGGGCAGTAGCCTTGGCGTGAATGATATGCGTATAATGTGTGCGAGTCAGTCTGGTGAAGCAAATACGTCTTCTTTAGGAATGGTGAAT] [+] EMBL CD201313 [GTTCTATACTCGGGGCTCACTTTACCGCTCGGACTACCCGATGTGTATCCTTATGTATGAGAATCGCAGAAGTTCTCAGACCTATGTAGTTCAAGTATATAGGTACATGCAAAGGGTATGCATGCGATGTCTTATAAAGGAAACGTTGAGCTGCAAAAATGTCTGCCCTGTGTTTAATAAAATCAGCGGACTATCCATCAGGTCGAAGGCATAATAAAAATAGGTGGTAACAAATAGTACGGTGGGGCGACCAACAGCCTCCCCTGAAAGAGTGCTTATGCTTATGTGTGTCTCAGGGAATACAAGGGCAGTAGCCTTGGCGTGAATGATATGCGTATAATGTGTGCGAGTCAGTCTGGTGAAGCAAATACGTCTTCTTTAGGAATGGTGAAT] consensusID : consensus_2278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [TATATTCGAAGCTCACTTTACCGCTCGAGCTACTCGATGAGTATGCTTATGTATGAGAACTGCAGAAGTTCTCGGACCTATGTAGTTCAAGTATATAGGTATATGCAAAGGGTACGCATGCGGTGTCGTACAAAGGGAACGTTGAGCTGCAAAAATTTCTGCCCTTTGTCTAGTAAAATCAGCGGCCTATTTTTCAGGTCGAAGACATAATTAAACGAGGTGCTAGCAAACACTAGGGTGAGGTGACTAACAACCTCTCCTGAGTGATAATGCTTATATGTGTCAGGAAATACTGGAGTGGTAACCATGGTGTGAATGATATACATACAAAGTGTAAGAGTCAGTCTGATGTAGCGAATACGTTTTCTTTGGGAGCGATGAAC] [+] EMBL CD084534 [TATATTCGAAGCTCACTTTACCGCTCGAGCTACTCGATGAGTATGCTTATGTATGAGAACTGCAGAAGTTCTCGGACCTATGTAGTTCAAGTATATAGGTATATGCAAAGGGTACGCATGCGGTGTCGTACAAAGGGAACGTTGAGCTGCAAAAATTTCTGCCCTTTGTCTAGTAAAATCAGCGGCCTATTTTTCAGGTCGAAGACATAATTAAACGAGGTGCTAGCAAACACTAGGGTGAGGTGACTAACAACCTCTCCTGAGTGATAATGCTTATATGTGTCAGGAAATACTGGAGTGGTAACCATGGTGTGAATGATATACATACAAAGTGTAAGAGTCAGTCTGATGTAGCGAATACGTTTTCTTTGGGAGCGATGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2278#0 GTTCTATACTCGGGGCTCACTTTACCGCTCGGACTACCCGATGTGTATCCTTATGTATGA 60 consensus_2278#1 ----TATATTCGAAGCTCACTTTACCGCTCGAGCTACTCGATGAGTATGCTTATGTATGA 56 **** *** ***************** **** ***** **** *********** consensus_2278#0 GAATCGCAGAAGTTCTCAGACCTATGTAGTTCAAGTATATAGGTACATGCAAAGGGTATG 120 consensus_2278#1 GAACTGCAGAAGTTCTCGGACCTATGTAGTTCAAGTATATAGGTATATGCAAAGGGTACG 116 *** ************ *************************** ************ * consensus_2278#0 CATGCGATGTCTTATAAAGGAAACGTTGAGCTGCAAAAATGTCTGCCCTGTGTTTAATAA 180 consensus_2278#1 CATGCGGTGTCGTACAAAGGGAACGTTGAGCTGCAAAAATTTCTGCCCTTTGTCTAGTAA 176 ****** **** ** ***** ******************* ******** *** ** *** consensus_2278#0 AATCAGCGGACTATCCATCAGGTCGAAGGCATAATAAAAATAGGTGGTAACAAATAGTAC 240 consensus_2278#1 AATCAGCGGCCTATTTTTCAGGTCGAAGACATAATTAAACGAGGTGCTAGCAAACACTAG 236 ********* **** *********** ****** *** ***** ** **** * ** consensus_2278#0 GGTGGGGCGACCAACAGCCTCCCCTGAAAGAGTGCTTATGCTTATGTGTGTCTCAGGGAA 300 consensus_2278#1 GGTGAGGTGACTAACAACCTCTCCT----GAGTGATAATGCTTATATGTGTC--AGGAAA 290 **** ** *** **** **** *** ***** * ******** ****** *** ** consensus_2278#0 TACAAGGGCAGTAGCCTTGGCGTGAATGATATGCGTATAATGTGTGCGAGTCAGTCTGGT 360 consensus_2278#1 TACTGGAGTGGTAACCATGGTGTGAATGATATACATACAAAGTGTAAGAGTCAGTCTGAT 350 *** * * *** ** *** *********** * ** ** **** *********** * consensus_2278#0 GAAGCAAATACGTCTTCTTTAGGAATGGTGAAT 393 consensus_2278#1 GTAGCGAATACGTTTTCTTTGGGAGCGATGAAC 383 * *** ******* ****** *** * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||