These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_24#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TTAATCAATCATAATTGTTTGTCAATAATGTCTTTAGATTTTAGAGTATAAGCTTTTGAAGAAAATGTGTATAGTCGAAATGTAGTTGGGAATCTAGAAATGTTATTAAACGTACTTAGCACTCGTAATTGAGTTGCATTTGTTGAACTACTAACTTATTCAATCAACAGGATTTCTTACACAAATAAATTATTATTTGACCGTCAGGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATTCACATTCATTGTGACTTTTCTTTCGTTATCCATTTATGAAAAACCGAATTTATTTATGTTAAACCATATTGTTAAACATTCCATGTAAATTAATAAAGATGACACTTTTTGTTTAAATCTTCACTTAATAGAACTATCTNTCACATTCACTATTAATTACCTAAATACAT] [+] EMBL CD131641 [TTAATCAATCATAATTGTTTGTCAATAATGTCTTTAGATTTTAGAGTATAAGCTTTTGAAGAAAATGTGTATAGTCGAAATGTAGTTGGGAATCTAGAAATGTTATTAAACGTACTTAGCACTCGTAATTGAGTTGCATTTGTTGAACTACTAACTTATTCAATCAACAGGATTTCTTACACAAATAAATTATTATTTGACCGTCAGGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATTCACATTCATTGTGACTTTTCTTTCGTTATCCATTTATGAAAAACCGAATTTATTTATGTTAAACCATATTGTTAAACATTCCATGTAAATTAATAAAGATGACACTTTTTGTTTAAATCTTCACTTAATAGAACTATCTNTCACATTCACTATTAATTACCTAAATACAT] consensusID : consensus_24#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [ATCCCGGTGGAATTCACGAGTCGCGAGAGTAGACGTATCCATGAATGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATT] [+] EMBL CD128636 [ATCCCGGTGGAATTCACGAGTCGCGAGAGTAGACGTATCCATGAATGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_24#0 TTAATCAATCATAATTGTTTGTCAATAATGTCTTTAGATTTTAGAGTATAAGCTTTTGAA 60 consensus_24#1 ------------------------------------------------------------ consensus_24#0 GAAAATGTGTATAGTCGAAATGTAGTTGGGAATCTAGAAATGTTATTAAACGTACTTAGC 120 consensus_24#1 ------------------------------------------------------------ consensus_24#0 ACTCGTAATTGAGTTGCATTTGTTGAACTACTAACTTATTCAATCAACAGGATTTCTTAC 180 consensus_24#1 -----------------------------------------ATCCCGGTGGAATTCACGA 19 * * *** *** consensus_24#0 ACAAATAAATTATTATTTGACCGTCAG-GTTTTAAAATTCTCTATCATTCAAATTGGTAT 239 consensus_24#1 GTCGCGAGAGTAG-ACGTATCCATGAATGTTTTAAAATTCTCTATCATTCAAATTGGTAT 78 * * ** * * ** * * ******************************** consensus_24#0 GTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAAT 299 consensus_24#1 GTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAAT 138 ************************************************************ consensus_24#0 GTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATTCACATTCATTGTGACTTTTCT 359 consensus_24#1 GTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATT--------------------- 177 *************************************** consensus_24#0 TTCGTTATCCATTTATGAAAAACCGAATTTATTTATGTTAAACCATATTGTTAAACATTC 419 consensus_24#1 ------------------------------------------------------------ consensus_24#0 CATGTAAATTAATAAAGATGACACTTTTTGTTTAAATCTTCACTTAATAGAACTATCTNT 479 consensus_24#1 ------------------------------------------------------------ consensus_24#0 CACATTCACTATTAATTACCTAAATACAT 508 consensus_24#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||