These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2479#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [AGTGAATAGTTGTGGAGTGCGAGAATGAGAGAATGAGTGTGTATGTGTGTGTGTGTGTGTGTTTGCACATGTGACTAGTGGTGGATAGGATGGGAGAGGTTTGAGTGAAGCACGAGAAATGATGAGGGGAATCGGTGTTCCGAGAGGTTAGCAACACTGACAGAAATGTGAGGAAGTCAGTACTGGAAGAAGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGATTGGTGGCGTTGAACATCGCACTTTCTGTATGCTTTGTCCGTAAATATATTCCACATTGACGG] [+] EMBL CD088275 [AGTGAATAGTTGTGGAGTGCGAGAATGAGAGAATGAGTGTGTATGTGTGTGTGTGTGTGTGTTTGCACATGTGACTAGTGGTGGATAGGATGGGAGAGGTTTGAGTGAAGCACGAGAAATGATGAGGGGAATCGGTGTTCCGAGAGGTTAGCAACACTGACAGAAATGTGAGGAAGTCAGTACTGGAAGAAGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGATTGGTGGCGTTGAACATCGCACTTTCTGTATGCTTTGTCCGTAAATATATTCCACATTGACGG] consensusID : consensus_2479#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 118 fasta sequence [AGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGNATTGATGGTGTTGAANATGGCACTTNCTGTGTGCNTTGACCNNANATATATCCCACATTGANNGNATGTCACGTTTGTCA] [+] EMBL SMRAP100 [AGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGNATTGATGGTGTTGAANATGGCACTTNCTGTGTGCNTTGACCNNANATATATCCCACATTGANNGNATGTCACGTTTGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2479#0 AGTGAATAGTTGTGGAGTGCGAGAATGAGAGAATGAGTGTGTATGTGTGTGTGTGTGTGT 60 consensus_2479#1 ------------------------------------------------------------ consensus_2479#0 GTTTGCACATGTGACTAGTGGTGGATAGGATGGGAGAGGTTTGAGTGAAGCACGAGAAAT 120 consensus_2479#1 ------------------------------------------------------------ consensus_2479#0 GATGAGGGGAATCGGTGTTCCGAGAGGTTAGCAACACTGACAGAAATGTGAGGAAGTCAG 180 consensus_2479#1 ------------------------------------------------------------ consensus_2479#0 TACTGGAAGAAGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGA-TTGGTGGCGTT 239 consensus_2479#1 ----------AGGAAGGTGAGTGTTACGGGATGTGAGTGAAGCACCGNATTGATGGTGTT 50 ************************************* *** *** *** consensus_2479#0 GAACATCGCACTTTCTGTATGCTTTGTCCGTAAATATATTCCACATTGACGG-------- 291 consensus_2479#1 GAANATGGCACTTNCTGTGTGCNTTGACCNNANATATATCCCACATTGANNGNATGTCAC 110 *** ** ****** **** *** *** ** * ****** ********* * consensus_2479#0 -------- consensus_2479#1 GTTTGTCA 118 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||