|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence
[CAAAAATGGGCACGAGGGCCACTCGGACCAAGTTTTGCTGTCCTTCTAACTTCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAAATGGACTCTGGTGATCAACGAGGATGTGTTGATATAAATGAATGTGTTGATAGTCCTTGCAACAGATCTACACATTTTTGCTTAAACAAACCTGGTTCTTACGAGTGTGTTCCCTGTCATTCTGCTTGTAATAAATGTTCTGGTCCGACTGCAAACGATTGTGAATCTTGTGCAAGTGGATACCAAAGAGGAAATGGAGACGTATGTGAAGATATAAACGAATGTAATGCTGACAGTAATATTTGTAATAGCGAAGGAGAACTTTGCACAAACACAGTTGGGAGTTTTAAATGTGATTGCAAGAGTGGATACAAGCGGACTATTATTGG]
[+] EMBL CD081254 [CAAAAATGGGCACGAGGGCCACTCGGACCAAGTTTTGCTGTCCTTCTAACTTCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAAATGGACTCTGGTGATCAACGAGGATGTGTTGATATAAATGAATGTGTTGATAGTCCTTGCAACAGATCTACACATTTTTGCTTAAACAAACCTGGTTCTTACGAGTGTGTTCCCTGTCATTCTGCTTGTAATAAATGTTCTGGTCCGACTGCAAACGATTGTGAATCTTGTGCAAGTGGATACCAAAGAGGAAATGGAGACGTATGTGAAGATATAAACGAATGTAATGCTGACAGTAATATTTGTAATAGCGAAGGAGAACTTTGCACAAACACAGTTGGGAGTTTTAAATGTGATTGCAAGAGTGGATACAAGCGGACTATTATTGG]
consensusID : consensus_2545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[CTCTGTTAGCGAAGTGCGCTACCACGATATTGTCGAAGGAATCTGTAGTGATGTTAAACAAGCAGTCAAATGTCATGAGTTTATGGAAAGTATTGAACATCATCTAGAAGATTGGTGGCTTAGAGATTACAGGAGTTATGCTAATAAAATAGAAGGGTTTGAGGAGGATTTATGTGTCACTCGGACCAAGTTTTGCTGTCCTTCTAACTCCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAA]
[-] EMBL CD066232 [CTCTGTTAGCGAAGTGCGCTACCACGATATTGTCGAAGGAATCTGTAGTGATGTTAAACAAGCAGTCAAATGTCATGAGTTTATGGAAAGTATTGAACATCATCTAGAAGATTGGTGGCTTAGAGATTACAGGAGTTATGCTAATAAAATAGAAGGGTTTGAGGAGGATTTATGTGTCACTCGGACCAAGTTTTGCTGTCCTTCTAACTCCTTCGGGAATTCGTGTCTTCCATGCCCTCCGTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTGTATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTTTCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGGTTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2545#0 ------------------------------------------------------------
consensus_2545#1 CTCTGTTAGCGAAGTGCGCTACCACGATATTGTCGAAGGAATCTGTAGTGATGTTAAACA 60
consensus_2545#0 ------------------------------------------------------------
consensus_2545#1 AGCAGTCAAATGTCATGAGTTTATGGAAAGTATTGAACATCATCTAGAAGATTGGTGGCT 120
consensus_2545#0 --------------------------------------CAAAAATGGGCACGAGGGCCAC 22
consensus_2545#1 TAGAGATTACAGGAGTTATGCTAATAAAATAGAAGGGTTTGAGGAGGATTTATGTGTCAC 180
* ** * * ***
consensus_2545#0 TCGGACCAAGTTTTGCTGTCCTTCTAACTTCTTCGGGAATTCGTGTCTTCCATGCCCTCC 82
consensus_2545#1 TCGGACCAAGTTTTGCTGTCCTTCTAACTCCTTCGGGAATTCGTGTCTTCCATGCCCTCC 240
***************************** ******************************
consensus_2545#0 GTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTG 142
consensus_2545#1 GTGTTACTTTTCTGGTGGCAGGTGTGATGGTAATGGGACACGTTCTGGAACAGGTAGTTG 300
************************************************************
consensus_2545#0 TATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTT 202
consensus_2545#1 TATTTGCAACGATGGATATACTGGAGAGTTATGCGACAAGTGTACTTTTGAAACTCATTT 360
************************************************************
consensus_2545#0 TCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGG 262
consensus_2545#1 TCAGTCCCACAACGACTCTTCAATATCGTGCTTGCGATGTCATTTATCGTGCTCTGGTGG 420
************************************************************
consensus_2545#0 TTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAAATGGA 322
consensus_2545#1 TTGTTCCGGTCCATACCCTGAAAACTGTTCTGCGTGTGCTTCTGGATGGACCGAA----- 475
*******************************************************
consensus_2545#0 CTCTGGTGATCAACGAGGATGTGTTGATATAAATGAATGTGTTGATAGTCCTTGCAACAG 382
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 ATCTACACATTTTTGCTTAAACAAACCTGGTTCTTACGAGTGTGTTCCCTGTCATTCTGC 442
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 TTGTAATAAATGTTCTGGTCCGACTGCAAACGATTGTGAATCTTGTGCAAGTGGATACCA 502
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 AAGAGGAAATGGAGACGTATGTGAAGATATAAACGAATGTAATGCTGACAGTAATATTTG 562
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 TAATAGCGAAGGAGAACTTTGCACAAACACAGTTGGGAGTTTTAAATGTGATTGCAAGAG 622
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 TGGATACAAGCGGACTATTATTGG 646
consensus_2545#1 ------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||