cluster # 257

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Schistosoma mansoni
cluster # 257 cluster # 257 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_257#0 length = 416 sequences # 1

consensus_257#1 length = 317 sequences # 1

consensusID : consensus_257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [AAACGCTGATTGGATGAAATGCTTCTTAATGTTTCCTGAGCTTGTCATGTCTATTGCGAGAAATTTTCTAGATCACCCCAACACTATCTTATTGACAAAGGAGAAAAAGAAAGTGACGAACAAGAATATAATTAGCACTTAAGTATTATAAAAATTAGAAGGGGTGCTAAAACAGTGGAAGAATAATTTATTAGACATGACTGTTTTGTACAGAAATCTGGTTTAAAACAATAAACTGCTAGAGCTTAACCCGGACATAAATTCGAGTTATGCCTTATGGTCGGAGTTCGCTATGTGTTTGAGGATTGAACTGTTGATTGATTTGCATTCTCTTCGAGAGTAGTGCTCGGATATTCGTTCATCAAGTTCAGTGTTTGTACGGCCAATACAACCTGCTCCACGAAAGCAAGTAAACT]

[+] EMBL CD148771             [AAACGCTGATTGGATGAAATGCTTCTTAATGTTTCCTGAGCTTGTCATGTCTATTGCGAGAAATTTTCTAGATCACCCCAACACTATCTTATTGACAAAGGAGAAAAAGAAAGTGACGAACAAGAATATAATTAGCACTTAAGTATTATAAAAATTAGAAGGGGTGCTAAAACAGTGGAAGAATAATTTATTAGACATGACTGTTTTGTACAGAAATCTGGTTTAAAACAATAAACTGCTAGAGCTTAACCCGGACATAAATTCGAGTTATGCCTTATGGTCGGAGTTCGCTATGTGTTTGAGGATTGAACTGTTGATTGATTTGCATTCTCTTCGAGAGTAGTGCTCGGATATTCGTTCATCAAGTTCAGTGTTTGTACGGCCAATACAACCTGCTCCACGAAAGCAAGTAAACT]




>consensus_257#0
AAACGCTGATTGGATGAAATGCTTCTTAATGTTTCCTGAGCTTGTCATGTCTATTGCGAG
AAATTTTCTAGATCACCCCAACACTATCTTATTGACAAAGGAGAAAAAGAAAGTGACGAA
CAAGAATATAATTAGCACTTAAGTATTATAAAAATTAGAAGGGGTGCTAAAACAGTGGAA
GAATAATTTATTAGACATGACTGTTTTGTACAGAAATCTGGTTTAAAACAATAAACTGCT
AGAGCTTAACCCGGACATAAATTCGAGTTATGCCTTATGGTCGGAGTTCGCTATGTGTTT
GAGGATTGAACTGTTGATTGATTTGCATTCTCTTCGAGAGTAGTGCTCGGATATTCGTTC
ATCAAGTTCAGTGTTTGTACGGCCAATACAACCTGCTCCACGAAAGCAAGTAAACT

consensusID : consensus_257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [GCTGCCATTGATTGATAATTCTTGACACTTGTCTCGAATAGGTCAATTGCTCTGTTTCCAATCTAGATGTTAGAAATTGTTAAAACAATAGTTAAAGTTTTATTGAATAAATTCGCCCATATTTATTTCGTTAAAAACTTAGTTTGATCTCATCTTGCATCAGATAAACAAACCTGTGAATTTATGAATGTTTTAAACACTGGTGATGTTTACATAGGTTTTGTGCTGTTTTGATCCTAGTCGTTTCAGTTCCTAACTATGTCATGACTTCTCCTTTTCAGTTTTCACCAAGTCCTTTTCACTAGTTTGATATTTGC]

[+] EMBL CD131744             [GCTGCCATTGATTGATAATTCTTGACACTTGTCTCGAATAGGTCAATTGCTCTGTTTCCAATCTAGATGTTAGAAATTGTTAAAACAATAGTTAAAGTTTTATTGAATAAATTCGCCCATATTTATTTCGTTAAAAACTTAGTTTGATCTCATCTTGCATCAGATAAACAAACCTGTGAATTTATGAATGTTTTAAACACTGGTGATGTTTACATAGGTTTTGTGCTGTTTTGATCCTAGTCGTTTCAGTTCCTAACTATGTCATGACTTCTCCTTTTCAGTTTTCACCAAGTCCTTTTCACTAGTTTGATATTTGC]




>consensus_257#1
GCTGCCATTGATTGATAATTCTTGACACTTGTCTCGAATAGGTCAATTGCTCTGTTTCCA
ATCTAGATGTTAGAAATTGTTAAAACAATAGTTAAAGTTTTATTGAATAAATTCGCCCAT
ATTTATTTCGTTAAAAACTTAGTTTGATCTCATCTTGCATCAGATAAACAAACCTGTGAA
TTTATGAATGTTTTAAACACTGGTGATGTTTACATAGGTTTTGTGCTGTTTTGATCCTAG
TCGTTTCAGTTCCTAACTATGTCATGACTTCTCCTTTTCAGTTTTCACCAAGTCCTTTTC
ACTAGTTTGATATTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_257#0      AAACGCTGATTGGATGAAATGCTTCTTAATGTTTCCTGAGCTTGTCATGTCTATTGCGAG 60
consensus_257#1      ----------------------------------GCTGCCATTGAT-TGATAATTCTTGA 25
                                                        ***   ***   **   ***     

consensus_257#0      AAATTTTCTAGATCACCCCAACACTATCTTATTGACAAAGGAGAAAAAGAAAGTGACGAA 120
consensus_257#1      CACTTGTCTCGAATAGGTCAAT--TGCTCTGTTTCCAATCTAGATGTTAGAAATTGT--- 80
                      * ** *** **  *   ***   *    * **  ***   ***      ** *      

consensus_257#0      CAAGAATATAATTAGCACTTAAGTATTATAAAAATTAGAAGGGGTGCTAAAACAGTGGAA 180
consensus_257#1      TAAAACAATAGTTAAAGTTT---TATTGAATAAATTCGCCCATAT-TTATTTCGTTAAAA 136
                      ** *  *** ***    **   ****  * ***** *      *  **   *  *  **

consensus_257#0      GAATAATTT-ATTAGACATGACTGTTTTGTACAGAAATCTGGTTTAAAACAATAAACTGC 239
consensus_257#1      ACTTAGTTTGATCTCATCTTGC-ATCAGATAAACAAACCTG---TGAATTTATGAATGTT 192
                        ** *** **   *  *  *  *    ** * *** ***   * **   ** **    

consensus_257#0      TAGAGCTTAACCCGGACATAAATTCGAGTTATGCC-TTATGGTCGGAGTTCGCTATGTGT 298
consensus_257#1      TTAAACACTGGTGATGTTTACATAGGTTTTGTGCTGTTTTGATCCTAGTC--------GT 244
                     *  * *            ** **  *  ** ***  ** ** **  ***         **

consensus_257#0      TTGAGGATTGAACTGTTGATTGATTTGCATTCTCTTCGAGAGTAGTGCTCGGATATTCGT 358
consensus_257#1      TTCAGTTCCTAACTATGTCATGACTTC--TCCTTTTC---AGTTTTCACCAAGTCCTT-T 298
                     ** **     **** *    *** **   * ** ***   ***  *   *   *  *  *

consensus_257#0      TCATCAAGTTCAGTGTTTGTACGGCCAATACAACCTGCTCCACGAAAGCAAGTAAACT 416
consensus_257#1      TCACTA-GTTTGATATTTGC-------------------------------------- 317
                     ***  * ***   * ****