cluster # 2580

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Schistosoma mansoni
cluster # 2580 cluster # 2580 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2580#0 length = 540 sequences # 1

consensus_2580#1 length = 398 sequences # 1

consensusID : consensus_2580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTGTTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGTTTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGACTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATAACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGGTCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT]

[+] EMBL CD090071             [GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTGTTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGTTTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGACTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATAACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGGTCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT]




>consensus_2580#0
GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTG
TTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGT
TTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG
TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT
CTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTT
TCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGA
CTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATA
ACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGG
TCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT

consensusID : consensus_2580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATTTTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA]

[-] EMBL CD197802             [TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATTTTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA]




>consensus_2580#1
TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAG
ATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTT
TCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCA
TATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATT
TTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCA
AATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGA
AAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2580#0      GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTG 60
consensus_2580#1      ------------------------------------------------------------
                                                                                  

consensus_2580#0      TTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGT 120
consensus_2580#1      ------------------------------------------------------------
                                                                                  

consensus_2580#0      TTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG 180
consensus_2580#1      ----TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG 56
                          ********************************************************

consensus_2580#0      TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT 240
consensus_2580#1      TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT 116
                      ************************************************************

consensus_2580#0      CTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTT 300
consensus_2580#1      CTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTT 176
                      *********************** ************************************

consensus_2580#0      TCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGA 360
consensus_2580#1      TCCATATAGTAAATTGCGGTTTTTTTT----------AGTATACACTTATTGGTATTTTA 226
                      ***************************           * *****  ** * **   * *

consensus_2580#0      CTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATA 420
consensus_2580#1      CTAAGTATTTTATTTTACT-CTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGG-- 283
                      ***  *   ****  ** *  * *  ** ** *   *  *    **    **  *     

consensus_2580#0      ACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGG 480
consensus_2580#1      --ACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGA-ATGAAACA 340
                        *** *      **  *  * *  **         *   ***      ** ** ***  

consensus_2580#0      TCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT 540
consensus_2580#1      TTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA-- 398
                      * *  *   * **  *       *   *  *   *   *  *  **    ** * ***