These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTGTTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGTTTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGACTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATAACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGGTCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT] [+] EMBL CD090071 [GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTGTTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGTTTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGACTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATAACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGGTCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT] consensusID : consensus_2580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATTTTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA] [-] EMBL CD197802 [TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAGTAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGATCTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTTTCCATATAGTAAATTGCGGTTTTTTTTAGTATACACTTATTGGTATTTTACTAAGTATTTTATTTTACTCTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGGACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGAATGAAACATTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2580#0 GCTTCAATAAACCATAGTAAACGCCCTTCTACACTTTTATACAACACAACGAAGGCTGTG 60 consensus_2580#1 ------------------------------------------------------------ consensus_2580#0 TTAAGATTAATCTTATGACATGTTTCAATTATGTGTTTTGCAATAGAGGATGATGGATGT 120 consensus_2580#1 ------------------------------------------------------------ consensus_2580#0 TTATTCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG 180 consensus_2580#1 ----TCTCTACTCCTCCCTATATATGCGTGGCCACCACACATTTACATTGGCTAACACAG 56 ******************************************************** consensus_2580#0 TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT 240 consensus_2580#1 TAAGATGTGATGCAATCGTTTTCATGTCTTTTAGGATTTCGATGATGCATAAACCTTGAT 116 ************************************************************ consensus_2580#0 CTTTTCATGATAATGAACTTTGAAGCGTAATATGGGAAGGTATCACAGAAAACTATATTT 300 consensus_2580#1 CTTTTCATGATAATGAACTTTGATGCGTAATATGGGAAGGTATCACAGAAAACTATATTT 176 *********************** ************************************ consensus_2580#0 TCCATATAGTAAATTGCGGTTTTTTTTTTTTTTTCAAGGGATACAAGTAATAGTTGATGA 360 consensus_2580#1 TCCATATAGTAAATTGCGGTTTTTTTT----------AGTATACACTTATTGGTATTTTA 226 *************************** * ***** ** * ** * * consensus_2580#0 CTACTTTGGTTATACTATTATTACCATTATTGTAGGAACAATGGTTGAAGTTAGATAATA 420 consensus_2580#1 CTAAGTATTTTATTTTACT-CTGCTTTTTTTCTCAAAGAATCTATTTGCTTTCTACGG-- 283 *** * **** ** * * * ** ** * * * ** ** * consensus_2580#0 ACACCGTTGAATGTTGGCTCACTGGTCTCGAGGCTAACCGTTCACGCGCGAGATCAAAGG 480 consensus_2580#1 --ACCATATGGGATTTTCAAATTTATCAAATAAAATATAATTCGATTAAGA-ATGAAACA 340 *** * ** * * * ** * *** ** ** *** consensus_2580#0 TCCTGAGTCAAAATCCCGCGTGTGGGATCGTGGATCCACACTGCTGAGAAGTCTCATACT 540 consensus_2580#1 TTCACATATATAACACATGAAAAGTCCTTTTTTGTTTGCTTTAGTGCCCTGTTTAATA-- 398 * * * * ** * * * * * * * ** ** * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||