cluster # 2706

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Schistosoma mansoni
cluster # 2706 cluster # 2706 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2706#0 length = 290 sequences # 1

consensus_2706#1 length = 275 sequences # 1

consensusID : consensus_2706#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [GAGAATTTACACAAACGTTCATTATTTTGTTTTAACAACTTAACTTACTGAGATGAATTTCATCACTTTAGTGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTAGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTTGAGATGAATAAAATTAAACGGAGAGGGAAACAGAGAGCAATTATTATAACAACAGAAATTGAAAGGATCATTGATGTAAAGAAAATAATGAAGGAAAGATTGTGCAAATAAGGTATTTAAATGTATAGTTT]

[+] EMBL CD092320             [GAGAATTTACACAAACGTTCATTATTTTGTTTTAACAACTTAACTTACTGAGATGAATTTCATCACTTTAGTGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTAGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTTGAGATGAATAAAATTAAACGGAGAGGGAAACAGAGAGCAATTATTATAACAACAGAAATTGAAAGGATCATTGATGTAAAGAAAATAATGAAGGAAAGATTGTGCAAATAAGGTATTTAAATGTATAGTTT]




>consensus_2706#0
GAGAATTTACACAAACGTTCATTATTTTGTTTTAACAACTTAACTTACTGAGATGAATTT
CATCACTTTAGTGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTAGTATGAA
GCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTTGAGATGAATAAAATTAAACGG
AGAGGGAAACAGAGAGCAATTATTATAACAACAGAAATTGAAAGGATCATTGATGTAAAG
AAAATAATGAAGGAAAGATTGTGCAAATAAGGTATTTAAATGTATAGTTT

consensusID : consensus_2706#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [ATTTTATATAAACGTTCATTATTTTGTTTTACAACTTAACTTATGAGATGAATTTCATCACTTTAATGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTGGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTGAGAAGATTAAATTAAACGGAGAGGGAANACAGAGAGCATTATAATAACAACAGAATTGAAAGGATCATGATGTACAGAATAAATGAAGGAAGATGTGCAAATAAGGTATTTAATGTATAGT]

[+] EMBL CD120478             [ATTTTATATAAACGTTCATTATTTTGTTTTACAACTTAACTTATGAGATGAATTTCATCACTTTAATGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTGGTATGAAGCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTGAGAAGATTAAATTAAACGGAGAGGGAANACAGAGAGCATTATAATAACAACAGAATTGAAAGGATCATGATGTACAGAATAAATGAAGGAAGATGTGCAAATAAGGTATTTAATGTATAGT]




>consensus_2706#1
ATTTTATATAAACGTTCATTATTTTGTTTTACAACTTAACTTATGAGATGAATTTCATCA
CTTTAATGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTGGTATGAAGCAGC
ATTTGGAAGTGGAATGCCCGATAGCAGAAGATTGAGAAGATTAAATTAAACGGAGAGGGA
ANACAGAGAGCATTATAATAACAACAGAATTGAAAGGATCATGATGTACAGAATAAATGA
AGGAAGATGTGCAAATAAGGTATTTAATGTATAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2706#0      GAGAATTTACACAAACGTTCATTATTTTGTTTTAACAACTTAACTTACTGAGATGAATTT 60
consensus_2706#1      ---ATTTTATATAAACGTTCATTATTTTGTTTTA-CAACTTAACTTA-TGAGATGAATTT 55
                         * **** * ********************** ************ ************

consensus_2706#0      CATCACTTTAGTGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTAGTATGAA 120
consensus_2706#1      CATCACTTTAATGTTACTGTGGTCCATGCTACTTATGTTGACAGTTATAAGTGGTATGAA 115
                      ********** ***************************************** *******

consensus_2706#0      GCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATTTGAGATGAATAAAATTAAACGG 180
consensus_2706#1      GCAGCATTTGGAAGTGGAATGCCCGATAGCAGAAGATT-GAGAAGA-TTAAATTAAACGG 173
                      ************************************** **** ** * ***********

consensus_2706#0      AGAGGGAAA-CAGAGAGCAATTATTATAACAACAGAAATTGAAAGGATCATTGATGTAAA 239
consensus_2706#1      AGAGGGAANACAGAGAGCA-TTATAATAACAACAGAA-TTGAAAGGATCAT-GATGTACA 230
                      ********  ********* **** ************ ************* ****** *

consensus_2706#0      GAAAATAATGAAGGAAAGATTGTGCAAATAAGGTATTTAAATGTATAGTTT 290
consensus_2706#1      GAATA-AATGAAGGAAGA--TGTGCAAATAAGGTATTTAA-TGTATAGT-- 275
                      *** * **********    ******************** ********