These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [CCAATGTGTAGAATGCCAATTTATGAAATTGATTAAAAGGAATGAACTCTCCAACTATTTGAAAAGCAAAAAAAAGACAAAAAAAAGAAAAACTTTTTTTTAAAAAAAAAAGAAGAAAAAACTTGTTGAATTTCATCATAACGGATAACTAAACGAACAAAAGAGAAAGAGATAAGAGAGAGAAAAAAATCAATAATTTTTTTTTAGTATCTGGGTGATATTGTGATATATGTTTTTTTTTCTTGAATAGTAATCATTATTCTATTGACTCTTTATTGATGTGTTTTTTATATTTGTATGTATGTTGTTGTTGTGTGTAGATGATTTATCATGTACATGTTGTAATAGTTCGAGTCCAGATACTTCTATATATGTATTCTTATAAGATGCCCATCTTTAAACAAAGATTAT] [+] EMBL AI975110 [CCAATGTGTAGAATGCCAATTTATGAAATTGATTAAAAGGAATGAACTCTCCAACTATTTGAAAAGCAAAAAAAAGACAAAAAAAAGAAAAACTTTTTTTTAAAAAAAAAAGAAGAAAAAACTTGTTGAATTTCATCATAACGGATAACTAAACGAACAAAAGAGAAAGAGATAAGAGAGAGAAAAAAATCAATAATTTTTTTTTAGTATCTGGGTGATATTGTGATATATGTTTTTTTTTCTTGAATAGTAATCATTATTCTATTGACTCTTTATTGATGTGTTTTTTATATTTGTATGTATGTTGTTGTTGTGTGTAGATGATTTATCATGTACATGTTGTAATAGTTCGAGTCCAGATACTTCTATATATGTATTCTTATAAGATGCCCATCTTTAAACAAAGATTAT] consensusID : consensus_276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [TTGAAACAAAAAACCAAAAAAAAAAATTTTTAAAAAAAGAAAAAAAACTTGGAATTCACCAATACGATAACTTAACGACCCAAAACGAAGGTTCAGCGAGAGAAAAAAACCAAAAATTTTTTAGTAACCCGCGAAAATGGCAAAAAGGTTTTTTTCCTGAATAATAATCATATTCTAATGACTCTTTAATTCGAAAGTGGTTTTATATTGTAACTATGTGATTGTTGTGTTAAATAATTTATCATGTACATTTTTAAATAAKTCGAGTCCAGATACTTCTATATATGTACTTCTATATATCGTATTCTTATAAGATCCCCATCTTTAAACAAAGATTACT] [-] EMBL AI739704 [TTGAAACAAAAAACCAAAAAAAAAAATTTTTAAAAAAAGAAAAAAAACTTGGAATTCACCAATACGATAACTTAACGACCCAAAACGAAGGTTCAGCGAGAGAAAAAAACCAAAAATTTTTTAGTAACCCGCGAAAATGGCAAAAAGGTTTTTTTCCTGAATAATAATCATATTCTAATGACTCTTTAATTCGAAAGTGGTTTTATATTGTAACTATGTGATTGTTGTGTTAAATAATTTATCATGTACATTTTTAAATAAKTCGAGTCCAGATACTTCTATATATGTACTTCTATATATCGTATTCTTATAAGATCCCCATCTTTAAACAAAGATTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_276#0 CCAATGTGTAGAATGCCAATTTATGAAATTGATTAAAAGGAATGAACTCTCCAACTATTT 60 consensus_276#1 ------------------------------------------------------------ consensus_276#0 GAAAAGCAAAAAAAAGACAAAAAAAAGAAAAACTTTTTTTTAAAAAAAAAAGAAGAAAAA 120 consensus_276#1 ----TTGAAACAAAAAACCAAAAAAAAAAA------TTTTTAAAAAAAGAA----AAAAA 46 *** **** ** ******* *** ************ ** ***** consensus_276#0 ACTTGTTGAATTTCATCATAACGGATAACTAAACGAACAAAAGAGAAAGAGATAAGAGAG 180 consensus_276#1 ACTT---GGAATTCACCAATACG-ATAACTTAACGACCCAAAACGAAGGT--TCAGCGAG 100 **** * * **** ** *** ****** ***** * *** *** * * ** *** consensus_276#0 AGAAAAAAATCAATAATTTTTTTTTAGTATCTGGGTGATATTGTGATATATGTTTTTTTT 240 consensus_276#1 AGAAAAAAACCAAAAATTTTTT---AGTAACCCGCGAAAATGGCAAAAAG---GTTTTTT 154 ********* *** ******** **** * * * ** * * * ****** consensus_276#0 TCTTGAATAGTAATCATTATTCTATTGACTCTTTA--TTGATGTGTTTTTTATATTTGTA 298 consensus_276#1 TCCTGAATAATAATCAT-ATTCTAATGACTCTTTAATTCGAAAGTGGTTTTATATT-GTA 212 ** ****** ******* ****** ********** * ** ********* *** consensus_276#0 TGTATGTTGTTGTTGTGTGTAGATGATTTATCATGTACATGTTGTAATAGTTCGAGTCCA 358 consensus_276#1 ACTATGTGATTGTTGTGT-TAAATAATTTATCATGTACATTTTTAAATAAKTCGAGTCCA 271 ***** ********* ** ** *************** ** **** ********* consensus_276#0 GATACTTCTATATATGTA---------------TTCTTATAAGATGCCCATCTTTAAACA 403 consensus_276#1 GATACTTCTATATATGTACTTCTATATATCGTATTCTTATAAGATCCCCATCTTTAAACA 331 ****************** ************ ************** consensus_276#0 AAGATTAT- 411 consensus_276#1 AAGATTACT 340 ******* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||