These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [GATCCCGCACACGCGACATTCGAAGCCAGGACCTACCAATCTCGCACCGGAGCACTTAACCGGTAGACCACTGAGCTGGCATCCAGGTTTTCGATGGTGGTCTAACTTCAACTGACTCAGGATTTCAACTATGAAAATATTAAATTTTCCACAAAACCCCTTCTGATCAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATTCAACGTTTCACCTTGCAATTTGATTCAAGCTTCTTCAAGGATATTTCAAGGATATTATTTGAATAGATAATCAATTAGATGTAATTGAATTAC] [+] EMBL CD194361 [GATCCCGCACACGCGACATTCGAAGCCAGGACCTACCAATCTCGCACCGGAGCACTTAACCGGTAGACCACTGAGCTGGCATCCAGGTTTTCGATGGTGGTCTAACTTCAACTGACTCAGGATTTCAACTATGAAAATATTAAATTTTCCACAAAACCCCTTCTGATCAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATTCAACGTTTCACCTTGCAATTTGATTCAAGCTTCTTCAAGGATATTTCAAGGATATTATTTGAATAGATAATCAATTAGATGTAATTGAATTAC] consensusID : consensus_2765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [AACAATAACAGAGAATAAACTTCTCGTATAAGCTATTATAAAATTAACCGTTTGTTAAAAAAATTGTCTTTGAAATTAAAATTTCATAAACTAATTCTTACAAGACGTCAAATAGAAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATGCAACGTTTCGCCTGGCAATATGGCCCGAGCTTTTTCAAGGAAATATACATTTAGTGTCTTA] [+] EMBL CD093506 [AACAATAACAGAGAATAAACTTCTCGTATAAGCTATTATAAAATTAACCGTTTGTTAAAAAAATTGTCTTTGAAATTAAAATTTCATAAACTAATTCTTACAAGACGTCAAATAGAAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATGCAACGTTTCGCCTGGCAATATGGCCCGAGCTTTTTCAAGGAAATATACATTTAGTGTCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2765#0 GATCCCGCACACGCGACATTCGAAGCCAGGACCTACCAATCTCGCACCGGAGCACTTAAC 60 consensus_2765#1 --------------------------------------------AACAATAACAGAGAAT 16 ** * ** ** consensus_2765#0 CGGTAGACCAC-TGAGCTGGCATCCAGGTTTTCGATGGTGGTCTAACTTCAACTGACTCA 119 consensus_2765#1 AAACTTCTCGTATAAGCTATTATAAAATTAACCGTTTGTTAAAAA-----AATTGTCTTT 71 * * **** ** * * ** * ** * ** ** ** consensus_2765#0 GGATTTCAACTATGAAAATATTAAATTTTCCACAAAACCCCTTCTGATCAATAATATATT 179 consensus_2765#1 GAAATTAAAATTTCATAA-ACTAATTCTT--ACAAGACGTCAAATAGA-AATAATATATT 127 * * ** ** * * * ** * *** * ** **** ** * * *********** consensus_2765#0 TGTAAAATCTCAGCGAATGAATTTGAAGTAAATTCAACGTTTCACCTTGCAATTTGATTC 239 consensus_2765#1 TGTAAAATCTCAGCGAATGAATTTGAAGTAAATGCAACGTTTCGCCTGGCAATATGGCCC 187 ********************************* ********* *** ***** ** * consensus_2765#0 AAGCTTCTTCAAGGATATTTCAAGGATATTATTTGAATAGATAATCAATTAGATGTAATT 299 consensus_2765#1 GAGCTTTTTCAAGGAAATAT-ACATTTAGTGTCTTA------------------------ 222 ***** ******** ** * * ** * * * * consensus_2765#0 GAATTAC 306 consensus_2765#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||