cluster # 2766

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2766 cluster # 2766 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2766#0 length = 411 sequences # 1

consensus_2766#1 length = 304 sequences # 1

consensusID : consensus_2766#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [CCAAAAGTTAACTCAATAAATTTTCTTCAGCAATAAATGAATACATACTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGATTCTTTATGAAGGTAAAGAAAAGAATAGAGTTAGGATGTGTGAACGATTTTATACTAAAGAGATTATATAATATAATCCTAACCTTTAGTTTGCAAATATGTAAATGCCGCAACCCGTATTTAGTAGTAAACACGACGGTACTGGACGTCGAAGTGGCGCTTCGACATTGCTACTCTCATACAAGAACAGGAACAAGTTAATGTAATAACTAAACTCCAAACGC]

[+] EMBL CD093509             [CCAAAAGTTAACTCAATAAATTTTCTTCAGCAATAAATGAATACATACTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGATTCTTTATGAAGGTAAAGAAAAGAATAGAGTTAGGATGTGTGAACGATTTTATACTAAAGAGATTATATAATATAATCCTAACCTTTAGTTTGCAAATATGTAAATGCCGCAACCCGTATTTAGTAGTAAACACGACGGTACTGGACGTCGAAGTGGCGCTTCGACATTGCTACTCTCATACAAGAACAGGAACAAGTTAATGTAATAACTAAACTCCAAACGC]




>consensus_2766#0
CCAAAAGTTAACTCAATAAATTTTCTTCAGCAATAAATGAATACATACTTCATTTGGTAG
AGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCG
ATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTG
GAGAGGATTCTTTATGAAGGTAAAGAAAAGAATAGAGTTAGGATGTGTGAACGATTTTAT
ACTAAAGAGATTATATAATATAATCCTAACCTTTAGTTTGCAAATATGTAAATGCCGCAA
CCCGTATTTAGTAGTAAACACGACGGTACTGGACGTCGAAGTGGCGCTTCGACATTGCTA
CTCTCATACAAGAACAGGAACAAGTTAATGTAATAACTAAACTCCAAACGC

consensusID : consensus_2766#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [TCTTCAGGTAGCATAGGTCGTAATTTTCGTGCTTCTTTGTGACCATCCGGATGAATAACGCACCAAGTTGTATTAGGATATGGGAATTCGGACAGGCGGTTGGCAATGTTCCAAGGAGGTTTCTCAGAAAAATTCCAAACTGGTAGAAATTTCTCCTCTCTTTTTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGAG]

[-] EMBL BG931958             [TCTTCAGGTAGCATAGGTCGTAATTTTCGTGCTTCTTTGTGACCATCCGGATGAATAACGCACCAAGTTGTATTAGGATATGGGAATTCGGACAGGCGGTTGGCAATGTTCCAAGGAGGTTTCTCAGAAAAATTCCAAACTGGTAGAAATTTCTCCTCTCTTTTTTCATTTGGTAGAGAATCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAAACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGAGGAG]




>consensus_2766#1
TCTTCAGGTAGCATAGGTCGTAATTTTCGTGCTTCTTTGTGACCATCCGGATGAATAACG
CACCAAGTTGTATTAGGATATGGGAATTCGGACAGGCGGTTGGCAATGTTCCAAGGAGGT
TTCTCAGAAAAATTCCAAACTGGTAGAAATTTCTCCTCTCTTTTTTCATTTGGTAGAGAA
TCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAA
ACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGA
GGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2766#0      ------------------------------------------------------------
consensus_2766#1      TCTTCAGGTAGCATAGGTCGTAATTTTCGTGCTTCTTTGTGACCATCCGGATGAATAACG 60
                                                                                  

consensus_2766#0      ---------------------------------------------------CCAAAAGTT 9
consensus_2766#1      CACCAAGTTGTATTAGGATATGGGAATTCGGACAGGCGGTTGGCAATGTTCCAAGGAGGT 120
                                                                         * *  ** *

consensus_2766#0      AACTCAATAAATTTTCTT-----CAGCAATAAATGAATACATACTTCATTTGGTAGAGAA 64
consensus_2766#1      TTCTCAGAAAAATTCCAAACTGGTAGAAATTTCTCCTCTCTTTTTTCATTTGGTAGAGAA 180
                        ****  *** ** *        ** ***   *     * *  ****************

consensus_2766#0      TCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAA 124
consensus_2766#1      TCGGGTTGTTGAAACCTATGATCTGTTTCAAAACTCCAACCTAAAAGTTCTTTTCGATAA 240
                      ************************************************************

consensus_2766#0      ACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGA 184
consensus_2766#1      ACAGGACGGAACCTGATTAAGCGGGCTACATAACGCGGCCAATAATTAAATTTCTGGAGA 300
                      ************************************************************

consensus_2766#0      GGATTCTTTATGAAGGTAAAGAAAAGAATAGAGTTAGGATGTGTGAACGATTTTATACTA 244
consensus_2766#1      GGAG-------------------------------------------------------- 304
                      ***                                                         

consensus_2766#0      AAGAGATTATATAATATAATCCTAACCTTTAGTTTGCAAATATGTAAATGCCGCAACCCG 304
consensus_2766#1      ------------------------------------------------------------
                                                                                  

consensus_2766#0      TATTTAGTAGTAAACACGACGGTACTGGACGTCGAAGTGGCGCTTCGACATTGCTACTCT 364
consensus_2766#1      ------------------------------------------------------------
                                                                                  

consensus_2766#0      CATACAAGAACAGGAACAAGTTAATGTAATAACTAAACTCCAAACGC 411
consensus_2766#1      -----------------------------------------------