These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_279#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [GTGATTGTGGATGGTCGGGTGGGGTATCGTAATTGTGAGATTCGTGTCTGTCGATTGTATCGACATGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCAGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTCGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTCTCATCTCGCGGATCCCAGCCAGGT] [+] EMBL CD131774 [GTGATTGTGGATGGTCGGGTGGGGTATCGTAATTGTGAGATTCGTGTCTGTCGATTGTATCGACATGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCAGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTCGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTCTCATCTCGCGGATCCCAGCCAGGT] consensusID : consensus_279#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [AGACATAGGTAGGTATCGTAATTGTGATATTCGTGTCTGTCGATTGTATCGACCTGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCCGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTTGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTATCATCTCGCGGATCCCAGCCA] [+] EMBL CD128013 [AGACATAGGTAGGTATCGTAATTGTGATATTCGTGTCTGTCGATTGTATCGACCTGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCTTATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTCGTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCCGTTGATTGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTTGCCATTGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTATCATCTCGCGGATCCCAGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_279#0 GTGATTGTGGATGGTCGGGTGGGGTATCGTAATTGTGAGATTCGTGTCTGTCGATTGTAT 60 consensus_279#1 ----------AGACATAGGTAGG-TATCGTAATTGTGATATTCGTGTCTGTCGATTGTAT 49 * *** ** ************** ********************* consensus_279#0 CGACATGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCT 120 consensus_279#1 CGACCTGATTAGGGTCTTCTAAATACACGGCGATAATGATGTTATCGTTAGTTCTGTTCT 109 **** ******************************************************* consensus_279#0 TATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTC 180 consensus_279#1 TATCGATGATATAGTACTTAGGTTCGCTTTGAAGGGTCCGTCGTTTGCCGTTTCGAGGTC 169 ************************************************************ consensus_279#0 GTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCAGTTGAT 240 consensus_279#1 GTCGAAGTCGTGACGTGTGCACTATAGGGTAAGGCAGGTTGAAGGAAAATATCCGTTGAT 229 ***************************************************** ****** consensus_279#0 TGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTCGCCAT 300 consensus_279#1 TGCGATCGAGTGGTAATAGGCTTAACTGAACACATGGCGTTTGTAAGGCACCTTTGCCAT 289 ****************************************************** ***** consensus_279#0 TGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTCTCATCTCGC 360 consensus_279#1 TGGAAACGATTCTGAGTCATGCTATTCAAGGTCTCTAACCATCGGTTGCTATCATCTCGC 349 ************************************************** ********* consensus_279#0 GGATCCCAGCCAGGT 375 consensus_279#1 GGATCCCAGCCA--- 361 ************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||