These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [TGATATCAAGACTTTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTAGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGTAAAAGCACTTTGATAAATAACAATTATCCTTGAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTGAACGATCTGTCCTCATTCTCAGCTACTACTCGAGGATTCTTTTTGACAATGTCTTATCTCTGTGCTAGTGTGACGTTGCTACTTAAACCGACTCACGTATATACCAGACTTTATGTTGCATATAATTGACTGACTGGGGATTCGTCCTACCAATGGATGGGAGATTTTT] [+] EMBL CD190789 [TGATATCAAGACTTTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTAGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGTAAAAGCACTTTGATAAATAACAATTATCCTTGAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTGAACGATCTGTCCTCATTCTCAGCTACTACTCGAGGATTCTTTTTGACAATGTCTTATCTCTGTGCTAGTGTGACGTTGCTACTTAAACCGACTCACGTATATACCAGACTTTATGTTGCATATAATTGACTGACTGGGGATTCGTCCTACCAATGGATGGGAGATTTTT] consensusID : consensus_2867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [TTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTACGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTG] [-] EMBL CD095699 [TTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTGTGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAGATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTACGTGACTTGAGTTTATTCAGAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAACGGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTCGCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATTACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGGCTATAAACCGGTGAGGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2867#0 TGATATCAAGACTTTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTG 60 consensus_2867#1 -------------TTCCAAAAACTCAACCAGACCTATCTACTAACCGAACTTCATCAGTG 47 *********************************************** consensus_2867#0 TGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAG 120 consensus_2867#1 TGCTAAAGTTGGAGGAAGACATTTCGAATGGTGCACATGGCTTCAATAGAGCTGATTTAG 107 ************************************************************ consensus_2867#0 ATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTA-GTGACTTGAGTTTATTCA 179 consensus_2867#1 ATTTCCTATTCGGTGGTAGCATTCGGAATTTCGGACAGTTACGTGACTTGAGTTTATTCA 167 ***************************************** ****************** consensus_2867#0 GAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAAC 239 consensus_2867#1 GAAAGGACATAACTTCCGTCATTGATGAGCTGGCAATCCAGTTGAAAAATGAGAGTCAAC 227 ************************************************************ consensus_2867#0 GGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGGTAAAAGCACTTTGATAA 299 consensus_2867#1 GGAATAAAAACTAAACGCAATAGAAAAGTGAAGCAAACTAAGG----------------- 270 ******************************************* consensus_2867#0 ATAACAATTATCCTTGAGGCCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTC 359 consensus_2867#1 -------------------CCATTTGCACCATCTCTTTGGAATCAGGGTTTTTCGCCCTC 311 ***************************************** consensus_2867#0 GCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATT 419 consensus_2867#1 GCCTGAAGTGGATTCTTTGTATCCTCCAATCTGCAAAGCACGTTCGCTTTTTGTTCCATT 371 ************************************************************ consensus_2867#0 ACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGG 479 consensus_2867#1 ACATCCGTAAACACCACCCTTGCCACGAGAAGGTAGTGGATAGGGCATCCCTGGCGGTGG 431 ************************************************************ consensus_2867#0 CTATAAACCGGTGAGGGTGAACGATCTGTCCTCATTCTCAGCTACTACTCGAGGATTCTT 539 consensus_2867#1 CTATAAACCGGTGAGGGTG----------------------------------------- 450 ******************* consensus_2867#0 TTTGACAATGTCTTATCTCTGTGCTAGTGTGACGTTGCTACTTAAACCGACTCACGTATA 599 consensus_2867#1 ------------------------------------------------------------ consensus_2867#0 TACCAGACTTTATGTTGCATATAATTGACTGACTGGGGATTCGTCCTACCAATGGATGGG 659 consensus_2867#1 ------------------------------------------------------------ consensus_2867#0 AGATTTTT 667 consensus_2867#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||