cluster # 2871

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Schistosoma mansoni
cluster # 2871 cluster # 2871 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2871#0 length = 350 sequences # 1

consensus_2871#1 length = 296 sequences # 1

consensusID : consensus_2871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [GGATAACATGAAGGCAATTACAAAAAAGACATTTATATGATGCATGGAAAGGCCATTTACAAAGAGTGGTTATATAAATAGTGAAAAACAGTAGGTAGTTGAACAAAAAACATTCATAGGCAAAACAAAGCCGAAAAACAGCAGCTGTAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGCGCACA]

[+] EMBL CD096031             [GGATAACATGAAGGCAATTACAAAAAAGACATTTATATGATGCATGGAAAGGCCATTTACAAAGAGTGGTTATATAAATAGTGAAAAACAGTAGGTAGTTGAACAAAAAACATTCATAGGCAAAACAAAGCCGAAAAACAGCAGCTGTAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGCGCACA]




>consensus_2871#0
GGATAACATGAAGGCAATTACAAAAAAGACATTTATATGATGCATGGAAAGGCCATTTAC
AAAGAGTGGTTATATAAATAGTGAAAAACAGTAGGTAGTTGAACAAAAAACATTCATAGG
CAAAACAAAGCCGAAAAACAGCAGCTGTAGTTTGTCGAGCACGGATTAAATCTGAATGTA
TAATGCGATCAACATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAG
ATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATG
TTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGCGCACA

consensusID : consensus_2871#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [TCAGATGAATACGGTATAACAAGTTGAACAATTTCCGGTGAAACAAACAGATCGTCAACATTATTTTGTAAGCCAATTAAAACAGCAGCTGGAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACTCATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGTGCACA]

[+] EMBL CD096006             [TCAGATGAATACGGTATAACAAGTTGAACAATTTCCGGTGAAACAAACAGATCGTCAACATTATTTTGTAAGCCAATTAAAACAGCAGCTGGAGTTTGTCGAGCACGGATTAAATCTGAATGTATAATGCGATCAACTCATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGTGCACA]




>consensus_2871#1
TCAGATGAATACGGTATAACAAGTTGAACAATTTCCGGTGAAACAAACAGATCGTCAACA
TTATTTTGTAAGCCAATTAAAACAGCAGCTGGAGTTTGTCGAGCACGGATTAAATCTGAA
TGTATAATGCGATCAACTCATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCG
AATCAGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACC
CAAATGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGTGCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2871#0      GGATAACATGAAGGCAATTACAAAAAAGACATTTATATGATGCATGGAAAGGCCATTTAC 60
consensus_2871#1      -------------------------------------------TCAGATGAATACGGTAT 17
                                                                    **         ** 

consensus_2871#0      AAAGAGTGGTTATATAAATAGTGAAAAACAGTAGGTAGTTGAACAAAAAACATTCATAGG 120
consensus_2871#1      AACAAGTTGAACAATTTCCGGTGAAACA-AACAGATCGTC--------AACATTATTTTG 68
                      **  *** *    **     ****** * *  ** * **         ******  *  *

consensus_2871#0      CAAAACAAAGCCGAAAAACAGCAGCTGTAGTTTGTCGAGCACGGATTAAATCTGAATGTA 180
consensus_2871#1      TAAGCCAATT----AAAACAGCAGCTGGAGTTTGTCGAGCACGGATTAAATCTGAATGTA 124
                       **  ***      ************* ********************************

consensus_2871#0      TAATGCGATCAAC--ATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATC 238
consensus_2871#1      TAATGCGATCAACTCATGCGACTTATCCCAGTTGTAGTTCCACTGTTGAATTTTCGAATC 184
                      *************  *********************************************

consensus_2871#0      AGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAA 298
consensus_2871#1      AGATCCCATAGAATGTACACTACAGTATACAGATGCTGCTGTGAAAAATTTGAACCCAAA 244
                      ************************************************************

consensus_2871#0      TGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGCGCACA 350
consensus_2871#1      TGTTCTAAAATACCACATCGCAAGATGTAGAGGACAGGTGTTTACGTGCACA 296
                      ********************************************** *****