cluster # 29

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Schistosoma mansoni
cluster # 29 cluster # 29 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_29#0 length = 341 sequences # 1

consensus_29#1 length = 314 sequences # 1

consensusID : consensus_29#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [TTCTATCTTAAATAGACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAATAAATCATGTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGGGTGCAGATGATCTTTTACCAGGGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCAATATTGAATTTATAAACAATTTTGCTGGTGATAATCTAAATGGTGAATTAATATATCTGGTGTCAATTTTGTTCTGCCGTTGCTGAAATTCGACGTTTAATGTCTATCAGACCAATAAATAATAATCATGATGATGATAATAATAACTAAAAGTGATAATTTCTTTTTG]

[+] EMBL CD074089             [TTCTATCTTAAATAGACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAATAAATCATGTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGGGTGCAGATGATCTTTTACCAGGGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCAATATTGAATTTATAAACAATTTTGCTGGTGATAATCTAAATGGTGAATTAATATATCTGGTGTCAATTTTGTTCTGCCGTTGCTGAAATTCGACGTTTAATGTCTATCAGACCAATAAATAATAATCATGATGATGATAATAATAACTAAAAGTGATAATTTCTTTTTG]




>consensus_29#0
TTCTATCTTAAATAGACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAATAAATCAT
GTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGGGTGCAGATGATCTTTTA
CCAGGGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCAATATTGAA
TTTATAAACAATTTTGCTGGTGATAATCTAAATGGTGAATTAATATATCTGGTGTCAATT
TTGTTCTGCCGTTGCTGAAATTCGACGTTTAATGTCTATCAGACCAATAAATAATAATCA
TGATGATGATAATAATAACTAAAAGTGATAATTTCTTTTTG

consensusID : consensus_29#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [AACGTGATGAATTATTTCATCGAGAGTTGGCATTTTTACAAAATACTGTAACACCAACAGAATTACGAATTTCAAATGCATATCATATTGTTTTACCATTAAAATCCGTACAAAATGAACTTCTACTATTAGATTGCTATCATACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAATAAATCATGTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGTGTGCAGATGATCTTTTACCAGTGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCAATATTGAATTTATA]

[-] EMBL CD096274             [AACGTGATGAATTATTTCATCGAGAGTTGGCATTTTTACAAAATACTGTAACACCAACAGAATTACGAATTTCAAATGCATATCATATTGTTTTACCATTAAAATCCGTACAAAATGAACTTCTACTATTAGATTGCTATCATACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAATAAATCATGTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGTGTGCAGATGATCTTTTACCAGTGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCAATATTGAATTTATA]




>consensus_29#1
AACGTGATGAATTATTTCATCGAGAGTTGGCATTTTTACAAAATACTGTAACACCAACAG
AATTACGAATTTCAAATGCATATCATATTGTTTTACCATTAAAATCCGTACAAAATGAAC
TTCTACTATTAGATTGCTATCATACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAA
TAAATCATGTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGTGTGCAGATG
ATCTTTTACCAGTGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCA
ATATTGAATTTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_29#0      ------------------------------------------------------------
consensus_29#1      AACGTGATGAATTATTTCATCGAGAGTTGGCATTTTTACAAAATACTGTAACACCAACAG 60
                                                                                

consensus_29#0      ------------------------------------------------------------
consensus_29#1      AATTACGAATTTCAAATGCATATCATATTGTTTTACCATTAAAATCCGTACAAAATGAAC 120
                                                                                

consensus_29#0      --------TTCTATCTTAAATAGACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAA 52
consensus_29#1      TTCTACTATTAGATTGCTATCATACATCATCTGATAAACTTCGTTGTTTAAAACGTGTAA 180
                            **  **    *  * *************************************

consensus_29#0      TAAATCATGTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGGGTGCAGATG 112
consensus_29#1      TAAATCATGTTTTAGCTGCTTTGCAACTAGCCAATCCCACATCAATACCGTGTGCAGATG 240
                    ************************************************** *********

consensus_29#0      ATCTTTTACCAGGGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCA 172
consensus_29#1      ATCTTTTACCAGTGCTCATTTATTTAATTATACATGCAAATCCTCCTCGATTACTGAGCA 300
                    ************ ***********************************************

consensus_29#0      ATATTGAATTTATAAACAATTTTGCTGGTGATAATCTAAATGGTGAATTAATATATCTGG 232
consensus_29#1      ATATTGAATTTATA---------------------------------------------- 314
                    **************                                              

consensus_29#0      TGTCAATTTTGTTCTGCCGTTGCTGAAATTCGACGTTTAATGTCTATCAGACCAATAAAT 292
consensus_29#1      ------------------------------------------------------------
                                                                                

consensus_29#0      AATAATCATGATGATGATAATAATAACTAAAAGTGATAATTTCTTTTTG 341
consensus_29#1      -------------------------------------------------