cluster # 3005

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Schistosoma mansoni
cluster # 3005 cluster # 3005 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3005#0 length = 481 sequences # 1

consensus_3005#1 length = 417 sequences # 1

consensusID : consensus_3005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [TACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAATCATCTTCATCATCATCAACATCATCAAAGTTAAATTCACCTTACGGACGTAGAAGTCTTTCACATTGTAAATTGATCTAATTTTTCTCACTGCACTGAAATTTTCCCGCTATAAAAATTTTTACGGTATCATAGGGTTATACAAGAAGTTTTCTCGTCGAAATGCTATTTCGCCAACTAGAAATATGCTCGTTTACTTCAATTGAACAAGTAAATTGTGTTTAGGATGGAGCATCTATTTAAAAASTAAAGTCATTGATCAGTTTGTAATCTATTGTGATACAGATAATGTGTTCATCTACACTCTGTTTCGATATGTAACGTATTTTGGAACAGATGGATTGGAAATTGAATATAAAGTATATCTATCTAGTTCTTAGCTACTTCTGCTAATAGTT]

[+] EMBL SM1247301            [TACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAATCATCTTCATCATCATCAACATCATCAAAGTTAAATTCACCTTACGGACGTAGAAGTCTTTCACATTGTAAATTGATCTAATTTTTCTCACTGCACTGAAATTTTCCCGCTATAAAAATTTTTACGGTATCATAGGGTTATACAAGAAGTTTTCTCGTCGAAATGCTATTTCGCCAACTAGAAATATGCTCGTTTACTTCAATTGAACAAGTAAATTGTGTTTAGGATGGAGCATCTATTTAAAAASTAAAGTCATTGATCAGTTTGTAATCTATTGTGATACAGATAATGTGTTCATCTACACTCTGTTTCGATATGTAACGTATTTTGGAACAGATGGATTGGAAATTGAATATAAAGTATATCTATCTAGTTCTTAGCTACTTCTGCTAATAGTT]




>consensus_3005#0
TACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATG
ATTCCAAGTCATCATTTGTGGAATCATCTTCATCATCATCAACATCATCAAAGTTAAATT
CACCTTACGGACGTAGAAGTCTTTCACATTGTAAATTGATCTAATTTTTCTCACTGCACT
GAAATTTTCCCGCTATAAAAATTTTTACGGTATCATAGGGTTATACAAGAAGTTTTCTCG
TCGAAATGCTATTTCGCCAACTAGAAATATGCTCGTTTACTTCAATTGAACAAGTAAATT
GTGTTTAGGATGGAGCATCTATTTAAAAASTAAAGTCATTGATCAGTTTGTAATCTATTG
TGATACAGATAATGTGTTCATCTACACTCTGTTTCGATATGTAACGTATTTTGGAACAGA
TGGATTGGAAATTGAATATAAAGTATATCTATCTAGTTCTTAGCTACTTCTGCTAATAGT
T

consensusID : consensus_3005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [CAGTGTGAATATATTCATAGTCATGTAGAAAACAAATCTATATACACCACAAAACTATAAATTTACAATTCAAATATCATTCCCGTTGGTCAAGTGGTTATGCAGTTTGGATAATTCGTCATCCTGGTCATGGTTTACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAAGAATGCAGCAGCAAGTATGCCCTAATCAGTTGTACATGTTCGATCCTGGTTCAAAGTTTCTCCTCCAGTCGGTTAGTCGGCCTACATTGTCCGGTAGCCTAAAGTTAAATCATACTATCAATGCTAAAAAGTTTCATCCCCCCTGTTGGGCTGAAGTAAGAGGTACGGGTGGTAGTGTACCGAGTGCTAGAGATGGTCA]

[+] EMBL CD111706             [CAGTGTGAATATATTCATAGTCATGTAGAAAACAAATCTATATACACCACAAAACTATAAATTTACAATTCAAATATCATTCCCGTTGGTCAAGTGGTTATGCAGTTTGGATAATTCGTCATCCTGGTCATGGTTTACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGATTCCAAGTCATCATTTGTGGAAGAATGCAGCAGCAAGTATGCCCTAATCAGTTGTACATGTTCGATCCTGGTTCAAAGTTTCTCCTCCAGTCGGTTAGTCGGCCTACATTGTCCGGTAGCCTAAAGTTAAATCATACTATCAATGCTAAAAAGTTTCATCCCCCCTGTTGGGCTGAAGTAAGAGGTACGGGTGGTAGTGTACCGAGTGCTAGAGATGGTCA]




>consensus_3005#1
CAGTGTGAATATATTCATAGTCATGTAGAAAACAAATCTATATACACCACAAAACTATAA
ATTTACAATTCAAATATCATTCCCGTTGGTCAAGTGGTTATGCAGTTTGGATAATTCGTC
ATCCTGGTCATGGTTTACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTA
ATGGATTCACATATGATTCCAAGTCATCATTTGTGGAAGAATGCAGCAGCAAGTATGCCC
TAATCAGTTGTACATGTTCGATCCTGGTTCAAAGTTTCTCCTCCAGTCGGTTAGTCGGCC
TACATTGTCCGGTAGCCTAAAGTTAAATCATACTATCAATGCTAAAAAGTTTCATCCCCC
CTGTTGGGCTGAAGTAAGAGGTACGGGTGGTAGTGTACCGAGTGCTAGAGATGGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3005#0      TACAATCGCCAGAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATG 60
consensus_3005#1      ---------CAGTGTGAATATATTCATAGTCATGTAGAA-----AACAAATCTATATACA 46
                               ***      *   **** *   **  ** *     **   **  * ***  

consensus_3005#0      ATTCCAAGTCATCATTTGTGGAATCATCTTCATCATCATCAACATCATCAAAGTTAAATT 120
consensus_3005#1      CCACAAAACTATAAATTTACAATTCA-----AATATCATTCCCGTTGGTCAAGTGG---- 97
                         * **   ** * **    * ***     *  *****   * *     ****      

consensus_3005#0      CACCTTACGGACGTAGAAGTCTTTCACATTGTAAATTGATCTAATTTTTCTCACTGCACT 180
consensus_3005#1      ----TTATGCAGTTTGGATAATTCGTCATC-----CTGGTC--ATGGTTTACAATCGCCA 146
                          *** * *  * * *   **   ***       ** **  **  **  ** *   * 

consensus_3005#0      GAAATTTTCCCGCTATAAAAATTTTTACGGTATCATAGGGTTATACAAGAAGTTTTCTCG 240
consensus_3005#1      GAAGTTCTGCTTTCACAAATATTCAGTAAAGTTAATGGATTCACATATGA---TTCCAAG 203
                      *** ** * *    * *** ***         * ** *  * * * * **   ** *  *

consensus_3005#0      TCGAAATGCTATTTCGCCAACTAGAAATATGCTCGTTTACTTCAATTGAACAAGT--AAA 298
consensus_3005#1      TCATCAT-TTGTGGAAGAATGCAGCAGCAAGTATGCCCTAATCAGTTGTACATGTTCGAT 262
                      **   **  * *      *   ** *  * *   *      *** *** *** **   * 

consensus_3005#0      TTGTGTTTAGGATGGAGCATCTATTTAAAAASTAAAGTCATTGATCAGTTTGTAATCTAT 358
consensus_3005#1      CCTGGTTCAAAGTTTCTCCTCCAGTCGGTTAGTCGGCCTAC--ATTGTCCGGTAGCCTAA 320
                          *** *   *    * ** * *     * *      *   **      ***  *** 

consensus_3005#0      TGTGATACAGATAATGTGTTCATCTACACTCTGTTTCGATATGTAACGTATTTTGGAACA 418
consensus_3005#1      AGT----TAAATCATACTATCAATGCTAAAAAGTTTCATCCCCCCTGTTGGGCTGAAGTA 376
                       **     * ** **    ***     *    *****           *    ** *  *

consensus_3005#0      GATGG-ATTGGAAATTGAATATAAAGTATATCTATCTAGTTCTTAGCTACTTCTGCTAAT 477
consensus_3005#1      AGAGGTACGGGTGGTAGTGTACCGAGTGC-TAGAGATGGTCA------------------ 417
                         ** *  **   * *  **   ***   *  *  * **                    

consensus_3005#0      AGTT 481
consensus_3005#1      ----