cluster # 3006

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Schistosoma mansoni
cluster # 3006 cluster # 3006 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3006#0 length = 273 sequences # 1

consensus_3006#1 length = 145 sequences # 1

consensusID : consensus_3006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [ATAACAAAAAAACAAACAAAACGGAGAACATTGAAAAGAAAGAGAAACTACACCCGGAAAAAAAAGTACACAAAAAACAATCAAACAAAAGAACTCTATGATGGTTCAGCTGTGAAGTACATAAAAAAAAGAATAATCAACTATTTCATTAGTAGTATCATCAAATACAACCCATAAATATTCAAACAATTCAACTTACATTTTAGATTCAAAGTTAAATTGAATAAAAAATAAAGAAAATTAAGAAAAAAACAAACAAAACGGAGAACATTG]

[+] EMBL CD068472             [ATAACAAAAAAACAAACAAAACGGAGAACATTGAAAAGAAAGAGAAACTACACCCGGAAAAAAAAGTACACAAAAAACAATCAAACAAAAGAACTCTATGATGGTTCAGCTGTGAAGTACATAAAAAAAAGAATAATCAACTATTTCATTAGTAGTATCATCAAATACAACCCATAAATATTCAAACAATTCAACTTACATTTTAGATTCAAAGTTAAATTGAATAAAAAATAAAGAAAATTAAGAAAAAAACAAACAAAACGGAGAACATTG]




>consensus_3006#0
ATAACAAAAAAACAAACAAAACGGAGAACATTGAAAAGAAAGAGAAACTACACCCGGAAA
AAAAAGTACACAAAAAACAATCAAACAAAAGAACTCTATGATGGTTCAGCTGTGAAGTAC
ATAAAAAAAAGAATAATCAACTATTTCATTAGTAGTATCATCAAATACAACCCATAAATA
TTCAAACAATTCAACTTACATTTTAGATTCAAAGTTAAATTGAATAAAAAATAAAGAAAA
TTAAGAAAAAAACAAACAAAACGGAGAACATTG

consensusID : consensus_3006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [TCATCAAATACAACCCATAAATATTCAAACAATTCAACTTACATTTTAGATTCAAAGTTAAATTGAATAAAAAATAAAGAAAATTAAGCAAAAAACAAAAAAAAAAACAAATTCAAGGAGAATAACCTTAGAAAGGGTAGAGGTT]

[+] EMBL CD139896             [TCATCAAATACAACCCATAAATATTCAAACAATTCAACTTACATTTTAGATTCAAAGTTAAATTGAATAAAAAATAAAGAAAATTAAGCAAAAAACAAAAAAAAAAACAAATTCAAGGAGAATAACCTTAGAAAGGGTAGAGGTT]




>consensus_3006#1
TCATCAAATACAACCCATAAATATTCAAACAATTCAACTTACATTTTAGATTCAAAGTTA
AATTGAATAAAAAATAAAGAAAATTAAGCAAAAAACAAAAAAAAAAACAAATTCAAGGAG
AATAACCTTAGAAAGGGTAGAGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3006#0      ATAACAAAAAAACAAACAAAACGGAGAACATTGAAAAGAAAGAGAAACTACACCCGGAAA 60
consensus_3006#1      ------------------------------------------------------------
                                                                                  

consensus_3006#0      AAAAAGTACACAAAAAACAATCAAACAAAAGAACTCTATGATGGTTCAGCTGTGAAGTAC 120
consensus_3006#1      ------------------------------------------------------------
                                                                                  

consensus_3006#0      ATAAAAAAAAGAATAATCAACTATTTCATTAGTAGTATCATCAAATACAACCCATAAATA 180
consensus_3006#1      -------------------------------------TCATCAAATACAACCCATAAATA 23
                                                           ***********************

consensus_3006#0      TTCAAACAATTCAACTTACATTTTAGATTCAAAGTTAAATTGAATAAAAAATAAAGAAAA 240
consensus_3006#1      TTCAAACAATTCAACTTACATTTTAGATTCAAAGTTAAATTGAATAAAAAATAAAGAAAA 83
                      ************************************************************

consensus_3006#0      TTAAGAAAAAAACAAACAAAACGGAGAACATTG--------------------------- 273
consensus_3006#1      TTAAGCAAAAAACAAAAAAAAAAACAAATTCAAGGAGAATAACCTTAGAAAGGGTAGAGG 143
                      ***** ********** ****     **                                

consensus_3006#0      --
consensus_3006#1      TT 145