These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [CATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTACTTTTCAGCATGCTTCCTTCGATGTGTGTATCGAACACAATGCTGTTAAAATAATAAGGTGATTTGATTCAAGTTATCAAACAAAATGTACGTCCATTATGAAAATATAAAACATTCACTCAATCACATAATGGTAGTTCCACTACTGATTGACTATTTCATTCAATGGAAAATTATCATCACACTGCACAATAACATATTTAGTACTTTTTCATCTGCACTA] [+] EMBL CD119675 [CATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTACTTTTCAGCATGCTTCCTTCGATGTGTGTATCGAACACAATGCTGTTAAAATAATAAGGTGATTTGATTCAAGTTATCAAACAAAATGTACGTCCATTATGAAAATATAAAACATTCACTCAATCACATAATGGTAGTTCCACTACTGATTGACTATTTCATTCAATGGAAAATTATCATCACACTGCACAATAACATATTTAGTACTTTTTCATCTGCACTA] consensusID : consensus_3026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [TCGATGTGTGTTTGTGTAATCGAAGCGTTAACCTCTGAGCCCGTCTCATCATTGCAGTCATTTACTTTCAGCATATGAGTATCCTGATCATTGCTTTCAATGCATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTGCTTTTCGGCATGCTTCCTTCGTTGTGTGTATCGAACACAATGTTCTGATGACTTCAAACTCCACTAACGTGCCAC] [+] EMBL CD112090 [TCGATGTGTGTTTGTGTAATCGAAGCGTTAACCTCTGAGCCCGTCTCATCATTGCAGTCATTTACTTTCAGCATATGAGTATCCTGATCATTGCTTTCAATGCATTCGCCAGCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTGCTTTTCGGCATGCTTCCTTCGTTGTGTGTATCGAACACAATGTTCTGATGACTTCAAACTCCACTAACGTGCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3026#0 CATTCGCCAGCTTTTCCACACCAAATACATGT-TGTATCCAATGGTGTTACTTTTCAGCA 59 consensus_3026#1 -------------------TCGATGTGTGTTTGTGTAATCGAAGCGTTAACCTCTGAGCC 41 * * * * * **** * * * * ** * * *** consensus_3026#0 TGCTTCCTTCGATGTGTGTATCGAACACAATGCTGTTAAAATAATAAGGTGATTTGATTC 119 consensus_3026#1 CG-TCTCATCATTGCAGTCATTTACTTTCAGCATAT--GAGTATCCTGATCATTGCTTTC 98 * * * ** ** ** * * * * * ** * * *** *** consensus_3026#0 AAGTTATCAAACAAAATGTACGTCCATTATGAAAATATAAAACATTCACTCA-ATCACAT 178 consensus_3026#1 AATGCATTCGCCA----GCTTTTCCACACCAAATACATGTTGTATCCAATGGTGTTGCTT 154 ** ** ** * **** ** * ** ** ** * * * * consensus_3026#0 AATGGTAGTTCCACTACTGATTGACTATTTCATTCAATGGAAAATTATCATCACACTGCA 238 consensus_3026#1 TTCGGCATGCTTCCTTCGTTGTGTGTATCGAACACAATGTTCTGATGACTTCAAACTCCA 214 ** * ** * ** *** * ***** * * *** *** ** consensus_3026#0 CAATAACATATTTAGTACTTTTTCATCTGCACTA 272 consensus_3026#1 C--TAACGTGCCAC-------------------- 226 * **** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||