These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3039#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [CTGCAAGACGACGAAAACGCGCTTTGTCATCTGATGATGAAGAACAATTAAATTCCGATAACAATGAAGAAAGTAGTGGTGAAAGTGAAGTGACTCAAAAAGTAAAACGTCGAAATCCCCGTTCGTCTCGATCCAAAGGCGGTAATGACTCTAGTGCGTTCAATAGAAAACGTTCAGTTAGTCCAGCCAATCGTAATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTTCCATTTGCCGA] [+] EMBL CD153748 [CTGCAAGACGACGAAAACGCGCTTTGTCATCTGATGATGAAGAACAATTAAATTCCGATAACAATGAAGAAAGTAGTGGTGAAAGTGAAGTGACTCAAAAAGTAAAACGTCGAAATCCCCGTTCGTCTCGATCCAAAGGCGGTAATGACTCTAGTGCGTTCAATAGAAAACGTTCAGTTAGTCCAGCCAATCGTAATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTTCCATTTGCCGA] consensusID : consensus_3039#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [AATTCAGGCAAAAAATTCCTTTCTTTAACTATCTATATTGTGTTTTTGACTGATATTAATTCGGTATTTGTTTTATTATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTT] [-] EMBL CD112253 [AATTCAGGCAAAAAATTCCTTTCTTTAACTATCTATATTGTGTTTTTGACTGATATTAATTCGGTATTTGTTTTATTATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTGTTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATCTTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3039#0 CTGCAAGACGACGAAAACGCGCTTTGTCATCTGATGATGAAGAACAATTAAATTCCGATA 60 consensus_3039#1 ------------------------------------------------------------ consensus_3039#0 ACAATGAAGAAAGTAGTGGTGAAAGTGAAGTGACTCAAAAAGTAAAACGTCGAAATCCCC 120 consensus_3039#1 ---------------------------------------AATTCAGGCAA-AAAATTCCT 20 ** * * * **** ** consensus_3039#0 GTTCGTCTCGATCCAAAGGCGGTAATGACTCTAGTGCGTTCAATAGAAAACGTTCAGTTA 180 consensus_3039#1 TTCTTTAACTATCTATA--------------TTGTGTTTTTGACTGATATTAATTCGGTA 66 * * * *** * * * *** ** * ** * * * ** consensus_3039#0 GTCCAGCCAATCGTAATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTG 240 consensus_3039#1 TTT--GTT--TTATTATTCAGCTTCATCTAGAAATATCAGGCACGATACATCCTGTCTTG 122 * * * * ********************************************* consensus_3039#0 TTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATC 300 consensus_3039#1 TTTGTTCAGATTCAACTGGTGATATAGTTCTATGTTCCAACTGTCCCAATATATTCCATC 182 ************************************************************ consensus_3039#0 TTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTTCCA 360 consensus_3039#1 TTGACTGTCATGATCCCCCATTGCACCATATTCCACGTGGATATGGTTGGCAGTGTT--- 239 ********************************************************* consensus_3039#0 TTTGCCGA 368 consensus_3039#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||