These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [ATAAATGCATTCCGTATTCGTTGCATACTAACAAGCACTTGAGCAAATGGTGTCACAATCACACCTTCAACAGATGAATCTGGTAAGACTGCAGTTATTCCATTTGTACTTGATGAACTGGTACTAGTTGCAGCAGTTGCTCCGCCTGTACTAGATCGACCCAATCTAACAATCATCGATCCTCTACGTATAGGAATTTTTTTATTCATTAATTGTGATTCAAATGAATTATTTGTAATCGAATTTAAACCATTTCCAGTTGACGTATTTGGATCAGTTGATGTACGTGGTAAAAAAAATGTAGGAGAATTATGATGATTACAATAGGAATAAGCACGATTATTCGTTGTGAAATGTATATTGGTAATAGATCGCCTAAATAGC] [+] EMBL CD069033 [ATAAATGCATTCCGTATTCGTTGCATACTAACAAGCACTTGAGCAAATGGTGTCACAATCACACCTTCAACAGATGAATCTGGTAAGACTGCAGTTATTCCATTTGTACTTGATGAACTGGTACTAGTTGCAGCAGTTGCTCCGCCTGTACTAGATCGACCCAATCTAACAATCATCGATCCTCTACGTATAGGAATTTTTTTATTCATTAATTGTGATTCAAATGAATTATTTGTAATCGAATTTAAACCATTTCCAGTTGACGTATTTGGATCAGTTGATGTACGTGGTAAAAAAAATGTAGGAGAATTATGATGATTACAATAGGAATAAGCACGATTATTCGTTGTGAAATGTATATTGGTAATAGATCGCCTAAATAGC] consensusID : consensus_3088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [AAATCAAACAAATATATGTCTGGAATCAAATAAAAGCAACTGGAAATATATGATACATTGAATCAATGGAGTTACGAACCGATAAAGTGATTTCATCAAACGATACGATATCTTCGAGTCAAGAACCTCAGTTATCTCCACAAATTCCTGCAGTTGTTAAACCACGGCGTGGATCTATATTTGTTTCAGCACTTGCAGCGGAACAACATGGAGCATCATCTTTATCAACAGATAATACAGGATCGATGATTGTTAGATTGGGTCGATCTAGTACAGGCGGAGCAACTGCTGCAACTAGTACCAGTTCAT] [+] EMBL CD196124 [AAATCAAACAAATATATGTCTGGAATCAAATAAAAGCAACTGGAAATATATGATACATTGAATCAATGGAGTTACGAACCGATAAAGTGATTTCATCAAACGATACGATATCTTCGAGTCAAGAACCTCAGTTATCTCCACAAATTCCTGCAGTTGTTAAACCACGGCGTGGATCTATATTTGTTTCAGCACTTGCAGCGGAACAACATGGAGCATCATCTTTATCAACAGATAATACAGGATCGATGATTGTTAGATTGGGTCGATCTAGTACAGGCGGAGCAACTGCTGCAACTAGTACCAGTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3088#0 ATAAATGCATTCCGTATTCGTTGCATACTAACAAGCACTTGAGCAAATGGTGTCACAATC 60 consensus_3088#1 --AAATCAAACAAATATATGTCTGGAATCAA-----ATAAAAGCAACTGGAAATATA-TG 52 **** * *** ** * ** * ***** *** * * * consensus_3088#0 ACACCTTCAACAGATGAATCTGGTAAG-ACTGCAGTTATTCCATTTGTACTTGATGAACT 119 consensus_3088#1 ATACATTGAATCAATGGAGTTACGAACCGATAAAGTGATTTCATC-----------AAAC 101 * ** ** ** *** * * ** * *** *** *** ** consensus_3088#0 GGTACTAGTTGCAGCAGTTGCTCCGCCTGTACTAGATCGACCCAATCTAACAATCATCGA 179 consensus_3088#1 GATACGATATCTTCGAGTCAAGA-ACCTCAGTTATCTCCACAAATTCCTGCAGTTGTTAA 160 * *** * * *** *** ** ** ** * ** ** * * * consensus_3088#0 TCCTCTACGTATAGGAATTTTTTTATTCATTAATTGTGATTCAAATGAATTATTTGTAAT 239 consensus_3088#1 ACCACGGCGTGGATCTATATTTGT-TTCAGCACTTG-----CAGCGGAACAACATGGAGC 214 ** * *** * ** *** * **** * *** ** *** * ** * consensus_3088#0 CGAATTTAAACCATTTCCAGTTGACGTATTTGGATCAGTTGATGTACGTGGTAAAAAAAA 299 consensus_3088#1 ATCATCTTTATCA---ACAGATAATACAGGATCGATGATTGTTAGATTGGGTCGATCTAG 271 ** * * ** *** * * * *** * * *** * * consensus_3088#0 TGTAGGAGAATTATGATGATTACAATAGGAATAAGCACGATTATTCGTTGTGAAATGTAT 359 consensus_3088#1 TACAGGCGGAGCA--ACTGCTGCAACTAGTACCAGTTCAT-------------------- 309 * *** * * * * * *** * * ** * consensus_3088#0 ATTGGTAATAGATCGCCTAAATAGC 384 consensus_3088#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||