cluster # 3128

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Schistosoma mansoni
cluster # 3128 cluster # 3128 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3128#0 length = 472 sequences # 1

consensus_3128#1 length = 399 sequences # 1

consensusID : consensus_3128#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [AATCGAATGACGAAAAATGTCGCATATATATTTGGTGCCTCCTTGTGCCAATGTTTATGTGTTTAAATAAATAAATGAAAGTTTATTAACAAAATAACATATTGAAAATGATTGGTAAACTGAAAGTCTTTATGATGCAATCGGTAGTCGGCATTCTTTTTTGATACGTTCAGTTTGGTCTTGAAGTCGTTGTCTTAATTGTGATTGCTCCATCTGTGTAATTAAACTTAACGTCGTCAGTACTTAGCCAGTAATTTGTTAGTTAATTTATCTTTAAAAAAGCAGATCATTGTATTTCTTTTAGAATTANTAGCCGTTTAAGCATAATTATGCTGATAAAATCGATCATGATTGAGATAATGACTTTTAAGGTCACGTATTTAGAACTTATTCAAAAAATGGAACCATTCCTTATTTCAGTAGAAAAGGAAATAGATAAAGTACTTTATAGAACACTTAAACACTAGATTCA]

[+] EMBL CD146992             [AATCGAATGACGAAAAATGTCGCATATATATTTGGTGCCTCCTTGTGCCAATGTTTATGTGTTTAAATAAATAAATGAAAGTTTATTAACAAAATAACATATTGAAAATGATTGGTAAACTGAAAGTCTTTATGATGCAATCGGTAGTCGGCATTCTTTTTTGATACGTTCAGTTTGGTCTTGAAGTCGTTGTCTTAATTGTGATTGCTCCATCTGTGTAATTAAACTTAACGTCGTCAGTACTTAGCCAGTAATTTGTTAGTTAATTTATCTTTAAAAAAGCAGATCATTGTATTTCTTTTAGAATTANTAGCCGTTTAAGCATAATTATGCTGATAAAATCGATCATGATTGAGATAATGACTTTTAAGGTCACGTATTTAGAACTTATTCAAAAAATGGAACCATTCCTTATTTCAGTAGAAAAGGAAATAGATAAAGTACTTTATAGAACACTTAAACACTAGATTCA]




>consensus_3128#0
AATCGAATGACGAAAAATGTCGCATATATATTTGGTGCCTCCTTGTGCCAATGTTTATGT
GTTTAAATAAATAAATGAAAGTTTATTAACAAAATAACATATTGAAAATGATTGGTAAAC
TGAAAGTCTTTATGATGCAATCGGTAGTCGGCATTCTTTTTTGATACGTTCAGTTTGGTC
TTGAAGTCGTTGTCTTAATTGTGATTGCTCCATCTGTGTAATTAAACTTAACGTCGTCAG
TACTTAGCCAGTAATTTGTTAGTTAATTTATCTTTAAAAAAGCAGATCATTGTATTTCTT
TTAGAATTANTAGCCGTTTAAGCATAATTATGCTGATAAAATCGATCATGATTGAGATAA
TGACTTTTAAGGTCACGTATTTAGAACTTATTCAAAAAATGGAACCATTCCTTATTTCAG
TAGAAAAGGAAATAGATAAAGTACTTTATAGAACACTTAAACACTAGATTCA

consensusID : consensus_3128#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [AGGTCAAAGGCTCGGGATGTGGCTCCCTAAGAAAATCACCCGCTTTGGTCTGGGCACCCGGGCAGCGTCCCAGCCTTCATACAAATCGAATGATTTATGTGGCGCATATTTATTTGGTGCCTCCTTGTGCCAATGCTTATGTGTTTAAATAATAAACAATAATAACAGTAGAAAACAAAATCACTTTAATGTTTCTTCTAATAAACTGTACACAACTGATGCCAAGTACTAAACACGAAACTCATGTATAGTGAAAAATTAACAATCGTTAAGTGAATAATATTGGAATTCAACAACGTATAGAAGAAAAAGACATACCGCAAACGTCCACTAGAATATTGTAACTTGTCTATCAAAATTCATTCTACATGTTAAGCACGATATACATAATTCGTTTTT]

[+] EMBL CD114759             [AGGTCAAAGGCTCGGGATGTGGCTCCCTAAGAAAATCACCCGCTTTGGTCTGGGCACCCGGGCAGCGTCCCAGCCTTCATACAAATCGAATGATTTATGTGGCGCATATTTATTTGGTGCCTCCTTGTGCCAATGCTTATGTGTTTAAATAATAAACAATAATAACAGTAGAAAACAAAATCACTTTAATGTTTCTTCTAATAAACTGTACACAACTGATGCCAAGTACTAAACACGAAACTCATGTATAGTGAAAAATTAACAATCGTTAAGTGAATAATATTGGAATTCAACAACGTATAGAAGAAAAAGACATACCGCAAACGTCCACTAGAATATTGTAACTTGTCTATCAAAATTCATTCTACATGTTAAGCACGATATACATAATTCGTTTTT]




>consensus_3128#1
AGGTCAAAGGCTCGGGATGTGGCTCCCTAAGAAAATCACCCGCTTTGGTCTGGGCACCCG
GGCAGCGTCCCAGCCTTCATACAAATCGAATGATTTATGTGGCGCATATTTATTTGGTGC
CTCCTTGTGCCAATGCTTATGTGTTTAAATAATAAACAATAATAACAGTAGAAAACAAAA
TCACTTTAATGTTTCTTCTAATAAACTGTACACAACTGATGCCAAGTACTAAACACGAAA
CTCATGTATAGTGAAAAATTAACAATCGTTAAGTGAATAATATTGGAATTCAACAACGTA
TAGAAGAAAAAGACATACCGCAAACGTCCACTAGAATATTGTAACTTGTCTATCAAAATT
CATTCTACATGTTAAGCACGATATACATAATTCGTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3128#0      AATCGAATGACGAAAAATGTCGCATATATATTTGGTGCCTCCTTGTGCCAATGTTTATGT 60
consensus_3128#1      -----------------------------------------------------------A 1
                                                                                  

consensus_3128#0      GTTTAAATAAATAAATGAAAGTTTATTAACAAAATAACATATTGAAAATGATTGGTAAAC 120
consensus_3128#1      GGTCAAAGGCTCGGGATGTGGCTCCCTAAGAAAATCACCCGCTTTG---GTCTGGGCACC 58
                      * * ***             * *   *** ***** **    *      *  ***  * *

consensus_3128#0      TGAAAGTCTTTATGATGCAATCGGTAGTCGGCATTCTTTTTTGATACGT-TCAGTTTGGT 179
consensus_3128#1      CGGGCAGCGTCCCAGCCTTCATACAAATCGAATGATTTATGTGGCGCATATTTATTTGGT 118
                       *     * *               * ***      ** * **   * * *   ******

consensus_3128#0      CTTGAAGTCGTTGTCTTAATTGTGATTGCTCCATCTGTGTAATTAAACTTAACGTCGTCA 239
consensus_3128#1      GCC----TCCTTGTGCCAAT-------GCTT-ATGTGTTTAAATAA--TAAACAATAATA 164
                             ** ****   ***       ***  ** *** *** ***  * ***      *

consensus_3128#0      GTACTTAGCCAGTAATTTGTTAGTTAATTTATCTTTAAAAAAGCAGATCATTGTATTTCT 299
consensus_3128#1      ACAGTAGAAAACAAAATCACT--TTAATGTTTCTTCTAATAAACTGTACACAACTGATGC 222
                        * *     *  ** *   *  ***** * ****  ** ** * *  **       *  

consensus_3128#0      TTTAGAATTANTAGCCGTTTAAGCATAATTATGCTGATAAAATCGATCATGATTGAGATA 359
consensus_3128#1      C----AAGTACTAAACACG-AAACTCATGTATAGTGA-AAAATTAACAATCGTTAAGTGA 276
                           ** ** **  *    ** *  *  ***  *** *****  *  **  ** **  *

consensus_3128#0      ATGACTTTTAAGGTCACGTATTTAGAACTTATTCAAAAAATGGAACCATTCCTTAT-TTC 418
consensus_3128#1      ATAATATTGGAATTCA-------ACAACGTATAGAAGAAAAAGACATACCGCAAACGTCC 329
                      ** *  **  *  ***       * *** ***  ** ***  **   *   *  *  * *

consensus_3128#0      AGTAGAAAA--GGAAATAGA-TAAAGTACTTTATAGAACAC-TTAAACACTAGATTCA-- 472
consensus_3128#1      ACTAGAATATTGTAACTTGTCTATCAAAATTCATTCTACATGTTAAGCACGATATACATA 389
                      * ***** *  * ** * *  **    * ** **   ***  **** *** * ** **  

consensus_3128#0      ----------
consensus_3128#1      ATTCGTTTTT 399