cluster # 3138

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Schistosoma mansoni
cluster # 3138 cluster # 3138 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3138#0 length = 555 sequences # 1

consensus_3138#1 length = 325 sequences # 1

consensusID : consensus_3138#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [TCAGTGTAGATTAGATGGACATAAACCGACCAGCATATCCAGCCAATTTTTGCAATAAACATGAAAGATAAATTGATAAGAGTGTATCACATCAGGATCTCTGGTTATTTTGTTTTAAGGACAACTTCCAACTTTATGTAGGTTACTTGCTACTTCTGTTGTAATTTAATAGGGTTTCCCTTCCTAATTTACTTGGCTTTCACTGTCTATTTATGTAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACAATCAACCTACAGATGAATTAAAACTATTTGTTAGTTTTGTTGAAAGGTTAGTTTACTTCTGATCTGCACTAGTGATTTGTTGCTTTAATTTGAGAATTCCACATTATACTAAACATCTAATATTGAATAAAACCATTAATTATAATAAAAACGGAGAAA]

[+] EMBL CD114905             [TCAGTGTAGATTAGATGGACATAAACCGACCAGCATATCCAGCCAATTTTTGCAATAAACATGAAAGATAAATTGATAAGAGTGTATCACATCAGGATCTCTGGTTATTTTGTTTTAAGGACAACTTCCAACTTTATGTAGGTTACTTGCTACTTCTGTTGTAATTTAATAGGGTTTCCCTTCCTAATTTACTTGGCTTTCACTGTCTATTTATGTAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACAATCAACCTACAGATGAATTAAAACTATTTGTTAGTTTTGTTGAAAGGTTAGTTTACTTCTGATCTGCACTAGTGATTTGTTGCTTTAATTTGAGAATTCCACATTATACTAAACATCTAATATTGAATAAAACCATTAATTATAATAAAAACGGAGAAA]




>consensus_3138#0
TCAGTGTAGATTAGATGGACATAAACCGACCAGCATATCCAGCCAATTTTTGCAATAAAC
ATGAAAGATAAATTGATAAGAGTGTATCACATCAGGATCTCTGGTTATTTTGTTTTAAGG
ACAACTTCCAACTTTATGTAGGTTACTTGCTACTTCTGTTGTAATTTAATAGGGTTTCCC
TTCCTAATTTACTTGGCTTTCACTGTCTATTTATGTAGGTTAGCACCAGTTCAGAAGAAG
TGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGT
GTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGC
CTTCAACAATACAACTGACTCATTTTGTTGCTAACAATCAACCTACAGATGAATTAAAAC
TATTTGTTAGTTTTGTTGAAAGGTTAGTTTACTTCTGATCTGCACTAGTGATTTGTTGCT
TTAATTTGAGAATTCCACATTATACTAAACATCTAATATTGAATAAAACCATTAATTATA
ATAAAAACGGAGAAA

consensusID : consensus_3138#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [TAGATGAATTACTTCTTCCTCACACAGCGAAAGATGCTAATAATGTTCCCGAACATGAAGATTTCTATTTTTCTGATGGAAAACTTATTTATCCATCAGTTATGGATGTGAAAGAAGATACCTGTTCAGCGAAGCCACAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACCATAGGGC]

[-] EMBL CD167150             [TAGATGAATTACTTCTTCCTCACACAGCGAAAGATGCTAATAATGTTCCCGAACATGAAGATTTCTATTTTTCTGATGGAAAACTTATTTATCCATCAGTTATGGATGTGAAAGAAGATACCTGTTCAGCGAAGCCACAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACCATAGGGC]




>consensus_3138#1
TAGATGAATTACTTCTTCCTCACACAGCGAAAGATGCTAATAATGTTCCCGAACATGAAG
ATTTCTATTTTTCTGATGGAAAACTTATTTATCCATCAGTTATGGATGTGAAAGAAGATA
CCTGTTCAGCGAAGCCACAGGTTAGCACCAGTTCAGAAGAAGTGGATTTGAAAGGAAATC
AACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCATGGTGTCTTCGTAAGGGTGATA
AAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGATTGCCTTCAACAATACAACTGA
CTCATTTTGTTGCTAACCATAGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3138#0      TCAGTGTAGATTAGATGGACATAAACCGACCAGCATATCCAGCCAATTTTTGCAATAAAC 60
consensus_3138#1      ------------------------------------------------------------
                                                                                  

consensus_3138#0      ATGAAAGATAAATTGATAAGAGTGTATCACATCAGGATCTCTGGTTATTTTGTTTTAAGG 120
consensus_3138#1      ------------------TAGATGAATTACTTCTTCCTCACACAGCGAAAGATGCTAATA 42
                                            ** ** ** **    ** *           *  ***  

consensus_3138#0      ACAACTTCCAACTTTATGTAGGTTACTTGCTACTTCTGTTGTAATTTAATAGGGTTTCCC 180
consensus_3138#1      ATGTTCCCGAAC---ATGAAGATTTCTATTTTTCTGATGGAAAACTTATTTATCCATCAG 99
                      *      * ***   *** ** ** **   *   *       ** *** *      **  

consensus_3138#0      TTCCTAATTTACTTGGCTTTCACTGTCTATTTATGT---AGGTTAGCACCAGTTCAGAAG 237
consensus_3138#1      TTATGGATGTGAAAGAAGATACCTGTTCAGCGAAGCCACAGGTTAGCACCAGTTCAGAAG 159
                      **    ** *    *    *  ****  *   * *    *********************

consensus_3138#0      AAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCAT 297
consensus_3138#1      AAGTGGATTTGAAAGGAAATCAACAGGATTTGTTTTCCTTTTCTCAAACTGTTACTCCAT 219
                      ************************************************************

consensus_3138#0      GGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGAT 357
consensus_3138#1      GGTGTCTTCGTAAGGGTGATAAAAATAATCCTAATTCTGCAACGATTAATCAAGAAGGAT 279
                      ************************************************************

consensus_3138#0      TGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACAATCAACCTACAGATGAATTAA 417
consensus_3138#1      TGCCTTCAACAATACAACTGACTCATTTTGTTGCTAACCATAGGGC-------------- 325
                      ************************************** **    *              

consensus_3138#0      AACTATTTGTTAGTTTTGTTGAAAGGTTAGTTTACTTCTGATCTGCACTAGTGATTTGTT 477
consensus_3138#1      ------------------------------------------------------------
                                                                                  

consensus_3138#0      GCTTTAATTTGAGAATTCCACATTATACTAAACATCTAATATTGAATAAAACCATTAATT 537
consensus_3138#1      ------------------------------------------------------------
                                                                                  

consensus_3138#0      ATAATAAAAACGGAGAAA 555
consensus_3138#1      ------------------