These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3160#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GTTCTTCTCATAGACGAGGCGTCAGACAACTTCCCAGGAACCAAGAGTCTAATCCTTCTGTAAAATCTCAAAAAACATGGATTGATCCACAGAAAGACAAATTTCAGTCACCTAAAACTTCACAACAGCCTCAACAAAAATCCATTGAAACATCAAAACACTATTCCTTAGATTCTGTTTTAAATCCTATTCATGAAGAGAATGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCATTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGGCTTCTTCTGGCTCTT] [+] EMBL CD115315 [GTTCTTCTCATAGACGAGGCGTCAGACAACTTCCCAGGAACCAAGAGTCTAATCCTTCTGTAAAATCTCAAAAAACATGGATTGATCCACAGAAAGACAAATTTCAGTCACCTAAAACTTCACAACAGCCTCAACAAAAATCCATTGAAACATCAAAACACTATTCCTTAGATTCTGTTTTAAATCCTATTCATGAAGAGAATGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCATTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGGCTTCTTCTGGCTCTT] consensusID : consensus_3160#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [CTCGGTCACCCCTGGCAAGGGTGGAAAATCAGGAGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCTTTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGTCTTCTTCTGTCTCTTCACATTCTCTCTCCTCTCCCT] [+] EMBL CD167819 [CTCGGTCACCCCTGGCAAGGGTGGAAAATCAGGAGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAAACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGCCTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTCCTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCTTTACCACCACCTTCAGCACAAGTATCCTCCTCATCATCGTCGTCATCATCGTCTTCTTCTGTCTCTTCACATTCTCTCTCCTCTCCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3160#0 GTTCTTCTCATAGACGAGGCGTCAGACAACTTCCCAGGAACCAAGAGTCTAATCCTTCTG 60 consensus_3160#1 ------------------------------------------------------------ consensus_3160#0 TAAAATCTCAAAAAACATGGATTGATCCACAGAAAGACAAATTTCAGTCACCTAAAACTT 120 consensus_3160#1 ------------------------------------------------------------ consensus_3160#0 CACAACAGCCTCAACAAAAATCCATTGAAACATCAAAACACTATTCCTTAGATTCTGTTT 180 consensus_3160#1 ----------------------------------------------CTCGGTCACCCCTG 14 ** * * * consensus_3160#0 TAAATCCTATTCATGAAGAGAATGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAA 240 consensus_3160#1 GCAAG---GGTGGAAAATCAGGAGGTGATCATGGCTCTTTTGGTTCATCGGAAAATCAAA 71 ** * ** ************************************* consensus_3160#0 ACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGC 300 consensus_3160#1 ACTCTTATCCTTATCCACCATTTTACTATTTAAACAATCAAAACTCCTATCGATATTGGC 131 ************************************************************ consensus_3160#0 CTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTC 360 consensus_3160#1 CTACTTGGAATAATGAATACCAAAGTTTATCACCTGTTCAAGCCCCACTTCCACCTCCTC 191 ************************************************************ consensus_3160#0 CTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCATTACCACCACCTTCAGCACAAG 420 consensus_3160#1 CTCCACCGCCACCTATACCAACGGTCTCTGTTCTGTCTTTACCACCACCTTCAGCACAAG 251 ************************************* ********************** consensus_3160#0 TATCCTCCTCATCATCGTCGTCATCATCGGCTTCTTCTGGCTCTT--------------- 465 consensus_3160#1 TATCCTCCTCATCATCGTCGTCATCATCGTCTTCTTCTGTCTCTTCACATTCTCTCTCCT 311 ***************************** ********* ***** consensus_3160#0 ------ consensus_3160#1 CTCCCT 317 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||