These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CGTGGTCTAATTAGGTACCTATCTTTATGATCAGTGTGACTCAATTAAACACGATTTAACTATTCAAAAAATACAAAGCACACACTCCATCCATGCATATCACATACTGAAAAATGTTTTCTCTCTCAGCTTGCTAGAATTTCAGTATTTGTACGATGCTTCCATGGATCAGGTCTTTGCTGCTTGTCTAGTTCGCTACCTCAGGCATCTCAAAACCGTACCGGCTATATGCCTTCCACGTCAGTATCAACGAACATTATGTGATAACCCGATGTAAGCTACTTTTCTGTATTATTCTGTACAAGGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGTGATCACAATGATTATGCGGT] [+] EMBL CD196440 [CGTGGTCTAATTAGGTACCTATCTTTATGATCAGTGTGACTCAATTAAACACGATTTAACTATTCAAAAAATACAAAGCACACACTCCATCCATGCATATCACATACTGAAAAATGTTTTCTCTCTCAGCTTGCTAGAATTTCAGTATTTGTACGATGCTTCCATGGATCAGGTCTTTGCTGCTTGTCTAGTTCGCTACCTCAGGCATCTCAAAACCGTACCGGCTATATGCCTTCCACGTCAGTATCAACGAACATTATGTGATAACCCGATGTAAGCTACTTTTCTGTATTATTCTGTACAAGGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGTGATCACAATGATTATGCGGT] consensusID : consensus_3352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [TATGTGATACCCGAGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGAGATCACAATGATTATGCGGTAAAGTGATATTTTTGCCTAACTCAAGTAGGCGAGTTTGGCTGGGACGGTCTCACTCTTTCAAATGAGCCTTGCGTTAGAAATTAACTCGCCTATTCTCCTAGCTAAGTCCCAATTATGGTTTGCTCAAAGCTTAATGCAGAGAGGATTCTTGAAAAATTCTGCTAAAATATTGAGACGAATATACATAATGTGGAAGCCTCTCATGAGACCTGACCTTTC] [+] EMBL CD126083 [TATGTGATACCCGAGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGAGATCACAATGATTATGCGGTAAAGTGATATTTTTGCCTAACTCAAGTAGGCGAGTTTGGCTGGGACGGTCTCACTCTTTCAAATGAGCCTTGCGTTAGAAATTAACTCGCCTATTCTCCTAGCTAAGTCCCAATTATGGTTTGCTCAAAGCTTAATGCAGAGAGGATTCTTGAAAAATTCTGCTAAAATATTGAGACGAATATACATAATGTGGAAGCCTCTCATGAGACCTGACCTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3352#0 CGTGGTCTAATTAGGTACCTATCTTTATGATCAGTGTGACTCAATTAAACACGATTTAAC 60 consensus_3352#1 --------TATGTGATACCCGAGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTG 52 ** * **** * * *** * * * ** * * * consensus_3352#0 TATTCAAAAAATACAAAGCACA-CACTCCATCCATGCATATC-ACATACTGAAAAATGTT 118 consensus_3352#1 TAATCGAAGAGTCCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGAG 112 ** ** ** * * ** *** * ** * * ** * * ** ** * * consensus_3352#0 TTCTCTCTCAGCTTGCTAGAATTTCAGTATTTGTACGATGCTTCCATGGATCAGGTCTTT 178 consensus_3352#1 ATCACAATGATTATGCGGTAAAGTGA-TATTTTTGCCTAACTCAAGTAGGCGAGTTTGGC 171 ** * * * *** ** * * ***** * * ** * * ** * consensus_3352#0 GCTGCTTGTCTAGTTCGCTACCTCAGGCATC---TCAAAACCGTACCGGCTATATGCCTT 235 consensus_3352#1 TGGGACGGTCTCACTCTTTCAAATGAGCCTTGCGTTAGAAATTAACTCGCC-TAT-TCTC 229 * **** ** * ** * * * ** ** ** *** ** consensus_3352#0 CCACGTCAGTATCAACGAACATTATGTGATAACCCGATGTAAGCTACTTTTCTGTATTAT 295 consensus_3352#1 CTAGCTAAGTCCCAATTATGGTTTGCTCAAAGCTTAATGCAGAGAGGATTCTTGAAAAAT 289 * * * *** *** * ** * * * * *** * ** ** * ** consensus_3352#0 TCTGTACAAGGTGGAAAATCGTTATAAGTCGTCTGGTAAAGGCGATTGTAATCGAAGAGT 355 consensus_3352#1 TCTGCTAAAATATTGAGACGAATATACATAATGTGGAAGCCTCTCATGAGACCTGACCTT 349 **** ** * * **** * * *** * * ** * * * * consensus_3352#0 CCATGGCATGGCTTTCTACACTTGGTGGTGGATATTCTTCACTTGGTGATCACAATGATT 415 consensus_3352#1 TC---------------------------------------------------------- 351 * consensus_3352#0 ATGCGGT 422 consensus_3352#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||