These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [CCAAAAAGGAACGTAGACGACGCCAAGAAAGCTTTAAATGTGTTACGGAAGCCATTACATCACACCAATCAGTAAGCGAGATGATACCTGAGTTATGAATGTCCAGTTGACTGAAACATTCCAGGAGTTTTTCTTTATGACGAATTATCCGTTGCCATAAACACACAAATGCCATATTAACAGGATCGTTTAATGTTCTGTTCTTATCTAATACTTGATCTTGTACTTTTATAAGAACAAATACATTCACATAGATGTTAAGCGATGATAAAAAAGTATCTTTTGGTACACATTTTAATGGATACAGAGAAACAATAGCGTTTGGGTTGGTTACATTTATTTCATTAGACTTGCCACCAGTAACACAAGCATAGGCACCTTCATTACTGCGTAGTGTAAAATAATCGAATGATGAAAATATAGTTAAAACTTTTCCTGAGTGGGAAATATGCCATCCTT] [+] EMBL CD196709 [CCAAAAAGGAACGTAGACGACGCCAAGAAAGCTTTAAATGTGTTACGGAAGCCATTACATCACACCAATCAGTAAGCGAGATGATACCTGAGTTATGAATGTCCAGTTGACTGAAACATTCCAGGAGTTTTTCTTTATGACGAATTATCCGTTGCCATAAACACACAAATGCCATATTAACAGGATCGTTTAATGTTCTGTTCTTATCTAATACTTGATCTTGTACTTTTATAAGAACAAATACATTCACATAGATGTTAAGCGATGATAAAAAAGTATCTTTTGGTACACATTTTAATGGATACAGAGAAACAATAGCGTTTGGGTTGGTTACATTTATTTCATTAGACTTGCCACCAGTAACACAAGCATAGGCACCTTCATTACTGCGTAGTGTAAAATAATCGAATGATGAAAATATAGTTAAAACTTTTCCTGAGTGGGAAATATGCCATCCTT] consensusID : consensus_3368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [GTGTTTATGGCAACGGATAATTCGTCATAAAGAAAAACTCCTGGAATGTTTCAGTCAACTGGACATTCATAACTCAGGTTAATGTAAATGTTTTACTTTTTGTTGTTAAAGTAAAAGGAGACATGATCTTATTCTTTTAATTCATACATTATTTAAATTCTGCCAAATCTGTCCATATGTGGTTCTTCGTTCTTATTCACACAACATTATTTCTATTTTAATTATTTACGCTATTGGATTTTGGATTCATACTCCGGTCCTCCTGCTTTGACATG] [+] EMBL CD133559 [GTGTTTATGGCAACGGATAATTCGTCATAAAGAAAAACTCCTGGAATGTTTCAGTCAACTGGACATTCATAACTCAGGTTAATGTAAATGTTTTACTTTTTGTTGTTAAAGTAAAAGGAGACATGATCTTATTCTTTTAATTCATACATTATTTAAATTCTGCCAAATCTGTCCATATGTGGTTCTTCGTTCTTATTCACACAACATTATTTCTATTTTAATTATTTACGCTATTGGATTTTGGATTCATACTCCGGTCCTCCTGCTTTGACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3368#0 CCAAAAAGGAACGTAGACGACGCCAAGAAAGCTTTAAATGTGTTACGGAAGCCATTACAT 60 consensus_3368#1 ------------------------------------------------------------ consensus_3368#0 CACACCAATCAGTAAGCGAGATGATACCTG-AGTTATGAATGTCCAGTTG-ACTGAAACA 118 consensus_3368#1 -----------------------GTGTTTATGGCAACGGATAATTCGTCATAAAGAAAAA 37 * * * * * ** ** * **** * consensus_3368#0 TTCCAGGAGTTTTTCTTTATGACGAATTATCCGTTGCCATAAACACACAAATGCCATATT 178 consensus_3368#1 CTCCTGGAATGTTTC---------AGTCAACTG--------GACATTCATAACTCAGGTT 80 *** *** * **** * * * * * *** ** * ** ** consensus_3368#0 AACAGGATCGTTTAATGTTCTGTTCTTATC-TAATACTTGATCTTGTACTTTTATAAGAA 237 consensus_3368#1 AATGTAAATGTTTTACTTTTTGTTGTTAAAGTAAAAGGAGACATGATCTTATTCTTTTAA 140 ** * **** * ** **** *** *** * ** * * * ** * ** consensus_3368#0 CAAATACATTCACATAGATGTTAAGCGATGATAAAAAAGTATCTTTTGGTACACATTTTA 297 consensus_3368#1 TTCATACATT---AT-----TTAAATTCTGCCAAA------TCTGTCCATATGTGGTTCT 186 ******* ** **** ** *** *** * ** ** consensus_3368#0 ATGGATACAGAGAAACAATAGCGTTTGGGTTGGTTACATTTATTTCATTAGACTTGCCAC 357 consensus_3368#1 TCGTTCTTATTCACACAACATTATTTCTATTTTAATTATTTACGCTATTGGATTTTGGAT 246 * * * **** * *** ** ***** *** ** ** * consensus_3368#0 CAGTAACACAAGCATAGGCACCTTCATTACTGCGTAGTGTAAAATAATCGAATGATGAAA 417 consensus_3368#1 TCATACTCCGGTCCT-----CCTGCTTTGACATG-------------------------- 275 ** * * * *** * ** * consensus_3368#0 ATATAGTTAAAACTTTTCCTGAGTGGGAAATATGCCATCCTT 459 consensus_3368#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||