cluster # 3376

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Schistosoma mansoni
cluster # 3376 cluster # 3376 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3376#0 length = 583 sequences # 1

consensus_3376#1 length = 333 sequences # 1

consensusID : consensus_3376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGTTATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCCCGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGACTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTGTTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGACGCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAACACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCTTGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGGTATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTGTAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA]

[+] EMBL CD161224             [AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGTTATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCCCGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGACTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTGTTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGACGCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAACACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCTTGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGGTATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTGTAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA]




>consensus_3376#0
AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGT
TATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCC
CGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGA
CTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTG
TTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGAC
GCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAA
CACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCT
TGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGG
TATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTG
TAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA

consensusID : consensus_3376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTCAATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTTAGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGATCCAATTCCACGAATTTT]

[+] EMBL CD133598             [ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTCAATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTTAGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGATCCAATTCCACGAATTTT]




>consensus_3376#1
ATCTGATACAATAATCCATTTATTACCACATATAGAACCTAATCTTAAATGACGCCATTC
AATATAATGATCAATAGATGTTAATAAATCCGGACATAATTGTTCCCATAATTTTGTTTT
AGATGATAATAATTGATCTGGTTCTCTAAACCATAATGATGATAATGATGATGAATTGGA
TGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATATAGGATTTTGTTGATTTGT
TAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTTTCTCAGTATATGAAGCACAAAG
GAACATAGCCTGAGATCCAATTCCACGAATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3376#0      AAGGGATGTACTTTTCTCAGTATATGAAGCACAAAGTAACATAGCTAGATCTGAAAGTGT 60
consensus_3376#1      -----ATCTGATACAAT-AATCCATTTATTACCACATA-TAGAACCTAATCTTAAATGAC 53
                           ** *  *    * * *  **  *  ** *  **  * * *   **** ***    

consensus_3376#0      TATATTCAATAATAGATACCCAAAACTAATGAGTTCCATATTAAAACGAAACAGCTGCCC 120
consensus_3376#1      GCCATTCAATA-TAATGATCAATAGATGTTAA----TAAATCCGGACATAATTGTT--CC 106
                         ******** **   * * * *  *  * *     * **    **  **  * *  **

consensus_3376#0      CGTGTTTTAATTCATTTTTTTTGTAATGGTTATTTGAATCTTTCAATTGATGTTTGGGGA 180
consensus_3376#1      CATAATTTTGTT---TTAGATGATAATAATTGATCTGGTTCTCTAAACCATAAT-GATGA 162
                      * *  ***  **   **   *  ****  **  *    *  *  **   **  * *  **

consensus_3376#0      CTACAATTGATCGATCTCTTTTTAATGTATGTGCATCCAGGGCGGATTGCCTCGATATTG 240
consensus_3376#1      TAATGAT-GATGAATTGGATGTTTCAATGAATGGATGAAAGATAAAACGTTCACCTAATA 221
                        *  ** ***  **    * **    *   ** **  * *    *  *      ** * 

consensus_3376#0      TTTTAATTTACAAGCATTCTGTAAGCAGAGATGATGATGGCTATCAAGCGAATCTAGGAC 300
consensus_3376#1      TAGGATTTTGTTGA---TTTGTTAAATGAATTGGNTGTACTTTTAAAAGGGATGTACTTT 278
                      *   * ***        * *** *   **  **    *   * * **  * ** **    

consensus_3376#0      GCTCACTCCGTCTAATTTGGGACTCGTTAGCTGGATTTACTAGTCCTAAGTAGGACGAAA 360
consensus_3376#1      TCTCAGTATATGAAGCACAAAGGAACATAGCCTGAGAT-CCAATTCCACGAATTTT---- 333
                       **** *   *  *             ****  **  * * * * * * * *        

consensus_3376#0      CACGATTCCTGGATCCTACCATCCATCTCTGATTATTATCTAGTGTTTGTTTGTTTTTCT 420
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      TGGTTTTCAATTGTTGCCTGTCAATTTATGATGCAAACAATAAACAACTTTTGTAAAAGG 480
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      TATATTCTACTTAACAATCAAAAAATAGTACATTTCAATATGCTTAGGTAGTGCTTTTTG 540
consensus_3376#1      ------------------------------------------------------------
                                                                                  

consensus_3376#0      TAAGGATGACTCGTTAAAACTCTAGGAAGCCTCAAGAAGCCCA 583
consensus_3376#1      -------------------------------------------