cluster # 3401

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Schistosoma mansoni
cluster # 3401 cluster # 3401 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3401#0 length = 550 sequences # 1

consensus_3401#1 length = 237 sequences # 1

consensusID : consensus_3401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [CAGGTTGTGATGCATGACTTCCATGTAATAGTTGTTGTATTTAAACGTCATGAGGCTTTTAGACTTGTCAGCTGCATGTGACTTGTCTCCAACATATTTGGACAAAGCATTCAAAAAACATTTTCCATCAGTTCAAGCAGAGCCATGGAAACCTTAGAATCTATGTTGAAAGCTGTACGTGATTTTCTTAGCTTTCTTGAACAGAATAAACAAAGTATTCTCAATATATCGTCTGTTCCACCTGGGAGATTTCATCCAGTACCAGGCTGTTCAGAATGTATAACCAGTCTTCCTCCTACGAAAAATGATTACGTTGCTCAAACACCTATCGTACTGTTACCCAAACTTAATGAAAACCCAGACATTATCTCTCGGAGTTTCGATATATATTGTAGAACATCCAAGTCATCAAAACTTACTCCTAACCGTTTAAATATACCGTGTTCAGTATCGTCTGAACTATATTCATGGTGTCCTGTCGGACTACAAGTAGATGGGGATTGTTGTCTTGCTGGAATAGAAAGAAAACCAAATCAAATGTCTTGTAGAT]

[+] EMBL AI975673             [CAGGTTGTGATGCATGACTTCCATGTAATAGTTGTTGTATTTAAACGTCATGAGGCTTTTAGACTTGTCAGCTGCATGTGACTTGTCTCCAACATATTTGGACAAAGCATTCAAAAAACATTTTCCATCAGTTCAAGCAGAGCCATGGAAACCTTAGAATCTATGTTGAAAGCTGTACGTGATTTTCTTAGCTTTCTTGAACAGAATAAACAAAGTATTCTCAATATATCGTCTGTTCCACCTGGGAGATTTCATCCAGTACCAGGCTGTTCAGAATGTATAACCAGTCTTCCTCCTACGAAAAATGATTACGTTGCTCAAACACCTATCGTACTGTTACCCAAACTTAATGAAAACCCAGACATTATCTCTCGGAGTTTCGATATATATTGTAGAACATCCAAGTCATCAAAACTTACTCCTAACCGTTTAAATATACCGTGTTCAGTATCGTCTGAACTATATTCATGGTGTCCTGTCGGACTACAAGTAGATGGGGATTGTTGTCTTGCTGGAATAGAAAGAAAACCAAATCAAATGTCTTGTAGAT]




>consensus_3401#0
CAGGTTGTGATGCATGACTTCCATGTAATAGTTGTTGTATTTAAACGTCATGAGGCTTTT
AGACTTGTCAGCTGCATGTGACTTGTCTCCAACATATTTGGACAAAGCATTCAAAAAACA
TTTTCCATCAGTTCAAGCAGAGCCATGGAAACCTTAGAATCTATGTTGAAAGCTGTACGT
GATTTTCTTAGCTTTCTTGAACAGAATAAACAAAGTATTCTCAATATATCGTCTGTTCCA
CCTGGGAGATTTCATCCAGTACCAGGCTGTTCAGAATGTATAACCAGTCTTCCTCCTACG
AAAAATGATTACGTTGCTCAAACACCTATCGTACTGTTACCCAAACTTAATGAAAACCCA
GACATTATCTCTCGGAGTTTCGATATATATTGTAGAACATCCAAGTCATCAAAACTTACT
CCTAACCGTTTAAATATACCGTGTTCAGTATCGTCTGAACTATATTCATGGTGTCCTGTC
GGACTACAAGTAGATGGGGATTGTTGTCTTGCTGGAATAGAAAGAAAACCAAATCAAATG
TCTTGTAGAT

consensusID : consensus_3401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [TGTTCACGTAGTCGAACTCATTTTCTTCAATGAAATTGTTTTCTACTTTATCAAACGTTATCAATTATATTTAACTGTTATATCCTTTAATGCATGATTTTTAAATATCATAAACGCTCTAGAAATTATGCAGCACTTATGACCAAATATCAGCGTAGAAATACTTTACACTTACTCATGACGTTTAAATACAACAACTATTACATGGAAGTCACGCATCACAACCTGAACACTAGA]

[+] EMBL CD167397             [TGTTCACGTAGTCGAACTCATTTTCTTCAATGAAATTGTTTTCTACTTTATCAAACGTTATCAATTATATTTAACTGTTATATCCTTTAATGCATGATTTTTAAATATCATAAACGCTCTAGAAATTATGCAGCACTTATGACCAAATATCAGCGTAGAAATACTTTACACTTACTCATGACGTTTAAATACAACAACTATTACATGGAAGTCACGCATCACAACCTGAACACTAGA]




>consensus_3401#1
TGTTCACGTAGTCGAACTCATTTTCTTCAATGAAATTGTTTTCTACTTTATCAAACGTTA
TCAATTATATTTAACTGTTATATCCTTTAATGCATGATTTTTAAATATCATAAACGCTCT
AGAAATTATGCAGCACTTATGACCAAATATCAGCGTAGAAATACTTTACACTTACTCATG
ACGTTTAAATACAACAACTATTACATGGAAGTCACGCATCACAACCTGAACACTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3401#0      CAGGTTGTGATGCATGACTTCCATGTAATAGTTGTTGTATTTAAACGTCATGAGGCTTTT 60
consensus_3401#1      ------------------------------------------------------------
                                                                                  

consensus_3401#0      AGACTTGTCAGCTGCATGTGACTTGTCTCCAACATATTTGGACAAAGCATTCAAAAAACA 120
consensus_3401#1      ------------------------------------------------------------
                                                                                  

consensus_3401#0      TTTTCCATCAGTTCAAGCAGAGCCATGGAAACCTTAGAATCTATGTTGAAAGCTGTACGT 180
consensus_3401#1      ------------------------------------------------------------
                                                                                  

consensus_3401#0      GATTTTCTTAGCTTTCTTGAACAGAATAAACAAAGTATTCTCAATATATCGTCTGTTCCA 240
consensus_3401#1      -----------------------------------------------------TGTTC-A 6
                                                                           ***** *

consensus_3401#0      CCTGGGAGATTTCATCCAGTACCAGGCTGTTCAGAATGTATAACCAGTCTTCCTCCTACG 300
consensus_3401#1      CGTAGTCGAACTCATTTTCTTCAATGAAATT---GTTTTCTACTTTATCAAACGT-TATC 62
                      * * *  **  ****    * * * *   **     * * **     **   *   **  

consensus_3401#0      AAAAATGATTACGTTGCTCAAACACCTATCGTACTGTTACCCAAACTTAATGAAAACCC- 359
consensus_3401#1      AATTATATTTA-ACTGTTATATCCTTTAATGCA-TGATTTTTAAATATCATAAACGCTCT 120
                      **  **  ***   ** *  * *   **  * * ** *    ***  * ** **  * * 

consensus_3401#0      AGACATTATCTCTCGGAGTTTCGAT-ATATATTGTAGAACATCCAAGTCATCAAAACTTA 418
consensus_3401#1      AGAAATTATGC--AGCACTTATGACCAAATATC----AGCGTAGAAATACTTTACACTTA 174
                      *** *****     * * **  **  * ****     * * *  ** *  *  * *****

consensus_3401#0      CTCCTAACCGTTTAAATATACCGTGTTCAGTATCGTCTGAACTATATTCATGGTGTCCTG 478
consensus_3401#1      CTCATGAC-GTTTAAATACAACA-----ACTATTACATGGAAGTCACGCATCACAACCTG 228
                      *** * ** ********* * *      * ***    ** *    *  ***     ****

consensus_3401#0      TCGGACTACAAGTAGATGGGGATTGTTGTCTTGCTGGAATAGAAAGAAAACCAAATCAAA 538
consensus_3401#1      A-ACACTAGA-------------------------------------------------- 237
                          **** *                                                  

consensus_3401#0      TGTCTTGTAGAT 550
consensus_3401#1      ------------