These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [TAACGAAGTTCCACTTGTAGCTTGAACATCATACACAGCAAGATGTGTAGCTACCAATTCTGGTAGTTTCTGATGAACCCATTGTTTTGCATGAGCACTAAGCTGTGGATCATTCGAATGCGTAAGTGAAAGACCAAGAACCACCTCTTGGAAACGATTAAGTGTTGAAATTTGAGTAATTTGAGAAAATAGTCTTGTCGACAATGATCTATTGTTCTTGTGTGTTGGTAGAGGATTTTCTATAGAATAGCAAACAAGTGACACGAAATTCGACTTTGACAATAACTTGTTGAGTTCTTGACTGAAATACTGGGCCTGATAAATGTCTTTTGGGGATTTACTTTCATCTTAACAATTA] [+] EMBL CD161203 [TAACGAAGTTCCACTTGTAGCTTGAACATCATACACAGCAAGATGTGTAGCTACCAATTCTGGTAGTTTCTGATGAACCCATTGTTTTGCATGAGCACTAAGCTGTGGATCATTCGAATGCGTAAGTGAAAGACCAAGAACCACCTCTTGGAAACGATTAAGTGTTGAAATTTGAGTAATTTGAGAAAATAGTCTTGTCGACAATGATCTATTGTTCTTGTGTGTTGGTAGAGGATTTTCTATAGAATAGCAAACAAGTGACACGAAATTCGACTTTGACAATAACTTGTTGAGTTCTTGACTGAAATACTGGGCCTGATAAATGTCTTTTGGGGATTTACTTTCATCTTAACAATTA] consensusID : consensus_3406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [TGTCTTTTGGGGATTTACTTTCATTTAAACAATTAACAGAAGAGAATAAACAGCGTACAAGGTGGCGTTCTGTTTCCAATGTGTGAAGTTTAATTATCTGATTAATCTCTGATTGGTTTGTCTTGTGGTTCTTTTTGTTTC] [+] EMBL CD071695 [TGTCTTTTGGGGATTTACTTTCATTTAAACAATTAACAGAAGAGAATAAACAGCGTACAAGGTGGCGTTCTGTTTCCAATGTGTGAAGTTTAATTATCTGATTAATCTCTGATTGGTTTGTCTTGTGGTTCTTTTTGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3406#0 TAACGAAGTTCCACTTGTAGCTTGAACATCATACACAGCAAGATGTGTAGCTACCAATTC 60 consensus_3406#1 ------------------------------------------------------------ consensus_3406#0 TGGTAGTTTCTGATGAACCCATTGTTTTGCATGAGCACTAAGCTGTGGATCATTCGAATG 120 consensus_3406#1 ------------------------------------------------------------ consensus_3406#0 CGTAAGTGAAAGACCAAGAACCACCTCTTGGAAACGATTAAGTGTTGAAATTTGAGTAAT 180 consensus_3406#1 ------------------------------------------------------------ consensus_3406#0 TTGAGAAAATAGTCTTGTCGACAATGATCTATTGTTCTTGTGTGTTGGTAGAGGATTTTC 240 consensus_3406#1 ------------------------TGTCTTTTGGGGATTTACTTTCATTTAAACAATTAA 36 ** * * * ** * * * * * ** consensus_3406#0 TATAGAATAGCAAACAAGTGACACGAAATTCGACTTTGACAATAACTTGTTGAGTTCTTG 300 consensus_3406#1 CAGAAGAGAATAAACAG--CGTACAAGGTGGCGTTCTGTTTCCAATGTGTGAAGTT--TA 92 * * * * ***** ** * * * ** ** *** **** * consensus_3406#0 ACTGAAATACTGGGC-CTGATAAATGTCTTTTGGGGATTTACTTTCATCTTAACAATTA 358 consensus_3406#1 ATTATCTGATTAATCTCTGATTGGTTTGTCTTGTGGTTCTTTTTGTTTC---------- 141 * * * * * ***** * * * *** ** * * ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||