These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [TATATCATTATTACAAATTGCATTTAGTGTAATACTTTCAAAACATTTGGTTAACATATATTGATATGAAAGAAAGATTGGTTGAAAAAAAAACAAATAATCTGTCTACATACACATACAGCACTGACAAACAGACAAAAGATATAAGCCATTCAAAGTTCAACAGTTGATATCTTCGCAATTCATATAAAAATACAAAGATAATACTCAAGGAGGTATATGTCAAACAAAGATGGGGAACAGGAAACTCT] [+] EMBL AI975672 [TATATCATTATTACAAATTGCATTTAGTGTAATACTTTCAAAACATTTGGTTAACATATATTGATATGAAAGAAAGATTGGTTGAAAAAAAAACAAATAATCTGTCTACATACACATACAGCACTGACAAACAGACAAAAGATATAAGCCATTCAAAGTTCAACAGTTGATATCTTCGCAATTCATATAAAAATACAAAGATAATACTCAAGGAGGTATATGTCAAACAAAGATGGGGAACAGGAAACTCT] consensusID : consensus_348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [ATGTTGATACGTTTAAAGAATCCACAGAATTTTTACTGAGGGTCAGGAAACTCTAAAAGCCATACATTTTTGCAATGTGTCTTTGTTCATACATATATAGACATAGCTTTTTATTTCGAGAAATCTG] [+] EMBL AI740256 [ATGTTGATACGTTTAAAGAATCCACAGAATTTTTACTGAGGGTCAGGAAACTCTAAAAGCCATACATTTTTGCAATGTGTCTTTGTTCATACATATATAGACATAGCTTTTTATTTCGAGAAATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_348#0 TATATCATTATTACAAATTGCATTTAGTGTAATACTTTCAAAACATTTGGTTAACATATA 60 consensus_348#1 -------------------------ATGTTGATACGTTTAAAGAATCCACAGAATTTTTA 35 * * **** ** *** ** ** * ** consensus_348#0 TTGATATGAAAGAAAGATTGGTTGAAAAAAAAACAAATAATCTGTCTACATACACATACA 120 consensus_348#1 CTGAGGGTCAGGAAACTCTAAAAGCCATACATTTTTGCAATGTGTCTTTGTTCATACATA 95 *** * **** * * * * * *** ***** * ** * * * consensus_348#0 GCACTGACAAACAGACAAAAGATATAAGCCATTCAAAGTTCAACAGTTGATATCTTCGCA 180 consensus_348#1 -TATAGAC--ATAGCTTTTTATTTCGAGAAATCTG------------------------- 127 * *** * ** * ** ** consensus_348#0 ATTCATATAAAAATACAAAGATAATACTCAAGGAGGTATATGTCAAACAAAGATGGGGAA 240 consensus_348#1 ------------------------------------------------------------ consensus_348#0 CAGGAAACTCT 251 consensus_348#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||