These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CCTACACTAGTCAGCATAGCGCGTCGTGGTAATCAGTGTTCAGGCATACGTAACATGTGGCCTAACCATCTCAGTCATTGTAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAATACCCTGTGTCTAACCTCACTATTACTTACCCGGTGATCCCAGAAGATGCGAGCAATATTTACTACTTAAACATTACCAAAATCTGTTTTTCTCAGGACAAGTTTCAATGACTTCTGGGTTGTATACTATATAATCTCTATAACAATGACTAATATAGTTTGATTTAAAAAGTACGTTTCCAAACATTGGTACAACCCTTCACTTTTATTGTAAGCAGAATAAACATACGTTGGAATCCGTCCAGCAGTGATTTACATTGAACAGTTTTTGTAAATGAGTACATCTTAGACAACAAATCCAAATGCAAAAAGTCTGAAGTTGACCCTTTAAGAAAGCATAGACTTAAAAGAAACCTAATCTTTTGCTTCAAAATCCCTAATAAACTATCTTTTACATTGACTGTTGAAATCCGATATGCANAAAT] [+] EMBL CD156125 [CCTACACTAGTCAGCATAGCGCGTCGTGGTAATCAGTGTTCAGGCATACGTAACATGTGGCCTAACCATCTCAGTCATTGTAGATTCATGACCTCATCAACTGATTTACCATCATTCCCTAATACCCTGTGTCTAACCTCACTATTACTTACCCGGTGATCCCAGAAGATGCGAGCAATATTTACTACTTAAACATTACCAAAATCTGTTTTTCTCAGGACAAGTTTCAATGACTTCTGGGTTGTATACTATATAATCTCTATAACAATGACTAATATAGTTTGATTTAAAAAGTACGTTTCCAAACATTGGTACAACCCTTCACTTTTATTGTAAGCAGAATAAACATACGTTGGAATCCGTCCAGCAGTGATTTACATTGAACAGTTTTTGTAAATGAGTACATCTTAGACAACAAATCCAAATGCAAAAAGTCTGAAGTTGACCCTTTAAGAAAGCATAGACTTAAAAGAAACCTAATCTTTTGCTTCAAAATCCCTAATAAACTATCTTTTACATTGACTGTTGAAATCCGATATGCANAAAT] consensusID : consensus_363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [GTCATATAACCTACAGTCTCCAACCATTGGTTAGAATAGTTACGCGGACCCTAACCACGTACTCTGCATCTACCAACATGGCTCAGAATAGAAGTTAGTGACTTGGTGGACTGATACCACCCTTTTGGTTTGGTCGCCCTTTATTCTCCACCAACCATCGCCAATACTAGTCAGGATTGCGCGTCGTGGTAATCGGTGTCCAGGCATACGTAACGCGTGA] [+] EMBL BG930903 [GTCATATAACCTACAGTCTCCAACCATTGGTTAGAATAGTTACGCGGACCCTAACCACGTACTCTGCATCTACCAACATGGCTCAGAATAGAAGTTAGTGACTTGGTGGACTGATACCACCCTTTTGGTTTGGTCGCCCTTTATTCTCCACCAACCATCGCCAATACTAGTCAGGATTGCGCGTCGTGGTAATCGGTGTCCAGGCATACGTAACGCGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_363#0 CCTACACTAGTCAGCATAGCGCGTCGTGGTAATCAGTGTTCAGGCATACGTAACATGTGG 60 consensus_363#1 ------------------------------------------------------------ consensus_363#0 CCTAACCATCTCAGTCATTGTAGATTCATGACCTCATCAACTGATTTACCATCATTCCCT 120 consensus_363#1 -----------------------------------------------------GTCATAT 7 * * consensus_363#0 AATACCCTGTGTCTAACC-TCACTATTACTTACCCGGTGATCCCAGAAGATGCGAGCAAT 179 consensus_363#1 AACCTACAGTCTCCAACCATTGGTTAGAATAGTTACGCGGACCCTAACCACGTACTCTGC 67 ** * ** ** **** * * * * * * *** * * * * consensus_363#0 ATTTACTACTTAAAC--ATTACCAAAATCTGTTTTTCTCAGGACAAGTTTCAATGACTTC 237 consensus_363#1 ATCTACCAACATGGCTCAGAATAGAAGTTAGTGACTTGGTGGACTGATACCACC--CTTT 125 ** *** * * * * ** * ** * **** * ** *** consensus_363#0 TGGGTTGTATACTATATAATCTCTAT-AACAATGACTAATATAGTTTGATTTAAAAAGTA 296 consensus_363#1 TGGTTTGGTCGCCCTTTATTCTCCACCAACCATCGCCAATA----CTAGTCAGGATTGCG 181 *** *** * * ** **** * *** ** * **** * * * * consensus_363#0 CGTTTCCAAACATTGGTACAACCCTTCACTTTTATTGTAAGCAGAATAAACATACGTTGG 356 consensus_363#1 CGTCGTGGTA-ATCGGTGT--CCAGGCATACGTAACGCGTGA------------------ 220 *** * ** *** ** ** ** * * consensus_363#0 AATCCGTCCAGCAGTGATTTACATTGAACAGTTTTTGTAAATGAGTACATCTTAGACAAC 416 consensus_363#1 ------------------------------------------------------------ consensus_363#0 AAATCCAAATGCAAAAAGTCTGAAGTTGACCCTTTAAGAAAGCATAGACTTAAAAGAAAC 476 consensus_363#1 ------------------------------------------------------------ consensus_363#0 CTAATCTTTTGCTTCAAAATCCCTAATAAACTATCTTTTACATTGACTGTTGAAATCCGA 536 consensus_363#1 ------------------------------------------------------------ consensus_363#0 TATGCANAAAT 547 consensus_363#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||