These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTTTACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGTAGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCTGTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACATNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAGCGTAAATGTTG] [+] EMBL CD155801 [GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTTTACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGTAGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCTGTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACATNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAGCGTAAATGTTG] consensusID : consensus_3642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG] [-] EMBL CD134885 [CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3642#0 GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA 60 consensus_3642#1 --CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA 58 ********************************************************** consensus_3642#0 CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC 120 consensus_3642#1 CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC 118 ************************************************************ consensus_3642#0 TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG 180 consensus_3642#1 TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG 178 ************************************************************ consensus_3642#0 GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT 240 consensus_3642#1 GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT 238 ************************************************************ consensus_3642#0 TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT 300 consensus_3642#1 TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT 298 ************************************************************ consensus_3642#0 CACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTT 360 consensus_3642#1 CACAAGTATTGGGAACGATATTTGTCGTCT------------------------------ 328 ****************************** consensus_3642#0 TACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGT 420 consensus_3642#1 -----CAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG-------------- 369 ***************************************** consensus_3642#0 AGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCT 480 consensus_3642#1 ------------------------------------------------------------ consensus_3642#0 GTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACA 540 consensus_3642#1 ------------------------------------------------------------ consensus_3642#0 TNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAG 600 consensus_3642#1 ------------------------------------------------------------ consensus_3642#0 CGTAAATGTTG 611 consensus_3642#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||