These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [GGTCATATCTGTGTCCTGTCTGATTCTCCAGACAGTAAAACTAAAGACAGTCACAAATAAAGTTTAAATAAATGTCGTTTGAAGTCTTACTGCCTGAGTGCCAGGAATGTGTCAACCAGAAAAATAAAGACAAAAGCACATGCTGGAAATAGCCAAAAGGTGAGCCGGGGTGACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTCTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCCTTCCAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGACCTCACCCAAAAGATGGGGGTTGGGGCTGGGGAATGGACGAGGCAGAAGTGCAAGAGCTTCACTGAGCTTCCTCTTCTTCATTCTCTCCAATGACAATGGTGTTGGAACAGGCCTTGAACCTTGTGGCCTTGACCCCAGCAGAGCCAAGAAGCGAAAGAGCACAAACTTGAGAGTCAT] [+] EMBL CD150594 [GGTCATATCTGTGTCCTGTCTGATTCTCCAGACAGTAAAACTAAAGACAGTCACAAATAAAGTTTAAATAAATGTCGTTTGAAGTCTTACTGCCTGAGTGCCAGGAATGTGTCAACCAGAAAAATAAAGACAAAAGCACATGCTGGAAATAGCCAAAAGGTGAGCCGGGGTGACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTCTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCCTTCCAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGACCTCACCCAAAAGATGGGGGTTGGGGCTGGGGAATGGACGAGGCAGAAGTGCAAGAGCTTCACTGAGCTTCCTCTTCTTCATTCTCTCCAATGACAATGGTGTTGGAACAGGCCTTGAACCTTGTGGCCTTGACCCCAGCAGAGCCAAGAAGCGAAAGAGCACAAACTTGAGAGTCAT] consensusID : consensus_3644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTTTTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCATTTCAAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGCCCTCACCCCAAAAGATGGGGTTGGGCCCGGGGAATGGAAGAGGCAGAAGNCCAAGAGCGTCACTGAGCTTCCTCTTCTTCATTCTCTCCAAGGACAAGGGTGGTGGAACAGGGCCGAACCTGGGCCTGACCCCCAGCAGAGCCAAGAAGCAGAAGAGCACCAAACTTGAGAGTCCATCAGCCCTAGCCAGCA] [-] EMBL CD150571 [GACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTTTTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCATTTCAAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGCCCTCACCCCAAAAGATGGGGTTGGGCCCGGGGAATGGAAGAGGCAGAAGNCCAAGAGCGTCACTGAGCTTCCTCTTCTTCATTCTCTCCAAGGACAAGGGTGGTGGAACAGGGCCGAACCTGGGCCTGACCCCCAGCAGAGCCAAGAAGCAGAAGAGCACCAAACTTGAGAGTCCATCAGCCCTAGCCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3644#0 GGTCATATCTGTGTCCTGTCTGATTCTCCAGACAGTAAAACTAAAGACAGTCACAAATAA 60 consensus_3644#1 ------------------------------------------------------------ consensus_3644#0 AGTTTAAATAAATGTCGTTTGAAGTCTTACTGCCTGAGTGCCAGGAATGTGTCAACCAGA 120 consensus_3644#1 ------------------------------------------------------------ consensus_3644#0 AAAATAAAGACAAAAGCACATGCTGGAAATAGCCAAAAGGTGAGCCGGGGTGACGCTTAT 180 consensus_3644#1 ---------------------------------------------------GACGCTTAT 9 ********* consensus_3644#0 GAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTCT-C 239 consensus_3644#1 GAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTTTTC 69 ******************************************************** * * consensus_3644#0 TTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCCTTCCA-GCTCTG 298 consensus_3644#1 TTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCATTTCAAGCTCTG 129 *********************************************** ** ** ****** consensus_3644#0 ACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGACCTCACCCAAAAGATGGGG 358 consensus_3644#1 ACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGCCCTCACCCCAAAAGATGGG 189 **************************************** ******** *** *** consensus_3644#0 GTTGGGGCTGGGGAATGGACGAGGCAGAAGTGCAAGAGCTTCACTGAGCTTCCTCTTCTT 418 consensus_3644#1 GTTGGGCCCGGGGAATGGAAGAGGCAGAAGNCCAAGAGCGTCACTGAGCTTCCTCTTCTT 249 ****** * ********** ********** ******* ******************** consensus_3644#0 CATTCTCTCCAATGACAATGGTGTTGGAACAGGCCTTGAACCTTGTGGCCTTGACCCCAG 478 consensus_3644#1 CATTCTCTCCAAGGACAAGGGTGGTGGAACAGGGCC-GAACCTG--GGCCTGACCCCCAG 306 ************ ***** **** ********* * ****** ***** ****** consensus_3644#0 CAGAGCCAAGAAGCGAAAGAGCAC-AAACTTGAGAGTC-AT--------------- 517 consensus_3644#1 CAGAGCCAAGAAGCAGAAGAGCACCAAACTTGAGAGTCCATCAGCCCTAGCCAGCA 362 ************** ******** ************* ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||