These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [CAGTGTTATTTGCATGATGTACACTAACATGTAGCATAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAAAAATGATGTAACATTTCCCATGAGTAGCTCCGAACTAAAATATTTCACTTTCTCTTGAAGTCTTAGTAAAGAGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTCTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACGCTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCGTAAACAATCGAAATTATTTCATCGCGAGACACCCAGGCAACAGAACTATCCAAATCATTATGTTCATGCCGTTAAGTAAATAACTTGTAATATGACGATATGAAAGCACTGTTAGTATGATAAAAAAGGATATGAATTATGAAGCCATTCGTCACGACTCTAATTTTCATTTCTGAACAGCCTACACTTGATACTAAAGAGAAGT] [+] EMBL CD151814 [CAGTGTTATTTGCATGATGTACACTAACATGTAGCATAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAAAAATGATGTAACATTTCCCATGAGTAGCTCCGAACTAAAATATTTCACTTTCTCTTGAAGTCTTAGTAAAGAGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTCTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACGCTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCGTAAACAATCGAAATTATTTCATCGCGAGACACCCAGGCAACAGAACTATCCAAATCATTATGTTCATGCCGTTAAGTAAATAACTTGTAATATGACGATATGAAAGCACTGTTAGTATGATAAAAAAGGATATGAATTATGAAGCCATTCGTCACGACTCTAATTTTCATTTCTGAACAGCCTACACTTGATACTAAAGAGAAGT] consensusID : consensus_3697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [TATTTGTCCGTCTTCTCCAGATGTAGCAAAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAGAAATGATGTAACATTTCCCATCAGTAGCTCCGAGCAAGAATATTTCACTTTCTCTTGAAGTCTTAGTAGAGTGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACACTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCATCAGCAATCGAAATTATTTCATCGCAAGACACCCAGTCAACAGAACTAGCCAAATCATTATGAATTATGAAGTCATTCGTCACGACTTTAATTT] [-] EMBL CD186090 [TATTTGTCCGTCTTCTCCAGATGTAGCAAAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAGAAATGATGTAACATTTCCCATCAGTAGCTCCGAGCAAGAATATTTCACTTTCTCTTGAAGTCTTAGTAGAGTGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACACTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCATCAGCAATCGAAATTATTTCATCGCAAGACACCCAGTCAACAGAACTAGCCAAATCATTATGAATTATGAAGTCATTCGTCACGACTTTAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3697#0 CAGTGTTATTTGCATGATGTACACTAACATGTAGCATAAGAAGTTCCATCGAAATTCCAT 60 consensus_3697#1 ------TATTTGTCCG-TCTTCTCCAG-ATGTAGCAAAAGAAGTTCCATCGAAATTCCAT 52 ****** * * * * * * ******** *********************** consensus_3697#0 TTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTA 120 consensus_3697#1 TTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTA 112 ************************************************************ consensus_3697#0 AAAATGATGTAACATTTCCCATGAGTAGCTCCGAACTAAAATATTTCACTTTCTCTTGAA 180 consensus_3697#1 GAAATGATGTAACATTTCCCATCAGTAGCTCCGAGCAAGAATATTTCACTTTCTCTTGAA 172 ********************* *********** * * ********************* consensus_3697#0 GTCTTAGTAAAGAGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTCTGGAAATAC 240 consensus_3697#1 GTCTTAGTAGAGTGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGT-TGGAAATAC 231 ********* ** ************************************* ********* consensus_3697#0 ATTTTGGGGCAAGCTGAATAAGTCTGACGCTTGATCTGATATCAGATTCCAACTTTTAAC 300 consensus_3697#1 ATTTTGGGGCAAGCTGAATAAGTCTGACACTTGATCTGATATCAGATTCCAACTTTTAAC 291 **************************** ******************************* consensus_3697#0 AGCTCGATCGTAAACAATCGAAATTATTTCATCGCGAGACACCCAGGCAACAGAACTATC 360 consensus_3697#1 AGCTCGATCATCAGCAATCGAAATTATTTCATCGCAAGACACCCAGTCAACAGAACTAGC 351 ********* * * ********************* ********** *********** * consensus_3697#0 CAAATCATTATGT-TCATGCCGTTAAGTAA-ATAACTTGTAATATGACGATATGAAAGCA 418 consensus_3697#1 CAAATCATTATGAATTATGAAGTCATTCGTCACGACTT-TAATTT--------------- 395 ************ * *** ** * * **** **** * consensus_3697#0 CTGTTAGTATGATAAAAAAGGATATGAATTATGAAGCCATTCGTCACGACTCTAATTTTC 478 consensus_3697#1 ------------------------------------------------------------ consensus_3697#0 ATTTCTGAACAGCCTACACTTGATACTAAAGAGAAGT 515 consensus_3697#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||