These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [TCCTCAGGACATCVATGTGACGTCGAGTGAGAACCGTGTGACGTACACGCGAAGAAGGAGACGACGACCGATGGTGGGGAAGCTGTAGTCCGGAGTTCTGTCGTATGGTGCAAGCTGGCGAAGAGTATTGATGATAAGTCAACTGGAATGTTCGCAGAAAGCATGTGGTGGTTTCGTGTTGGCAGCTTCCATGAAGGTGGTCCAAACCCGTCGTTAAAGNDACCAAGTCGTCAGGTGTCTTTCGACGAATACGGCATTCAGTTACGCGTTCCGCTATCAAATCTCTTTGAAAGTGTGTACGGGTCTGCATATGGTAAAGTTACTGTGAACGACAGACTTTAGTTTCCTGTACACGTGTAAACCTGAATCTTTTGACGTGATACCAACTGTGTGTGATGTGGCTCTATCGAGATGGTATCATGTAGTCGCCGACTCTCGATGATCATCGTC] [+] EMBL AI764952 [TCCTCAGGACATCVATGTGACGTCGAGTGAGAACCGTGTGACGTACACGCGAAGAAGGAGACGACGACCGATGGTGGGGAAGCTGTAGTCCGGAGTTCTGTCGTATGGTGCAAGCTGGCGAAGAGTATTGATGATAAGTCAACTGGAATGTTCGCAGAAAGCATGTGGTGGTTTCGTGTTGGCAGCTTCCATGAAGGTGGTCCAAACCCGTCGTTAAAGNDACCAAGTCGTCAGGTGTCTTTCGACGAATACGGCATTCAGTTACGCGTTCCGCTATCAAATCTCTTTGAAAGTGTGTACGGGTCTGCATATGGTAAAGTTACTGTGAACGACAGACTTTAGTTTCCTGTACACGTGTAAACCTGAATCTTTTGACGTGATACCAACTGTGTGTGATGTGGCTCTATCGAGATGGTATCATGTAGTCGCCGACTCTCGATGATCATCGTC] consensusID : consensus_371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GTTGTTGTTGTTGTTTAGACTATTGACGTATGTGTATGACATAAGTATAGATGTATGCATACATGTGTATATTTGATTGTATGTGAATAAATAAACATTTGTTTATCATCTGCCTGTCTGTCTGTCTGTTTATAATTAGCGGTGCAGATATTTATGTAAATACACATAGATTTGTGTGTACTTTAGTGTAGATAGATGAGTGTATAGTGTATAGTGTGTGTGTGTGTGTGTTTGTGCAAGCGTGTTGATCTATCATAAGTTATGTAGTGAATGTGTTAGTTGGTGGTAACTGTGGACTTGGCGTGTAACAATCCCCTTGCTGGGCAAAACACACTAAATGTATTGGACGGTGTTTAATCAGCTGGGCTAAATAGATAGTGAGCTGTTAAGTTAATCACAGGGTGGGGTCTATCACAACCTGTTCCATGTGCAGCTGA] [+] EMBL CD066035 [GTTGTTGTTGTTGTTTAGACTATTGACGTATGTGTATGACATAAGTATAGATGTATGCATACATGTGTATATTTGATTGTATGTGAATAAATAAACATTTGTTTATCATCTGCCTGTCTGTCTGTCTGTTTATAATTAGCGGTGCAGATATTTATGTAAATACACATAGATTTGTGTGTACTTTAGTGTAGATAGATGAGTGTATAGTGTATAGTGTGTGTGTGTGTGTGTTTGTGCAAGCGTGTTGATCTATCATAAGTTATGTAGTGAATGTGTTAGTTGGTGGTAACTGTGGACTTGGCGTGTAACAATCCCCTTGCTGGGCAAAACACACTAAATGTATTGGACGGTGTTTAATCAGCTGGGCTAAATAGATAGTGAGCTGTTAAGTTAATCACAGGGTGGGGTCTATCACAACCTGTTCCATGTGCAGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_371#0 -----------TCCTCAGGACATCVATGTGACGTCGAGTGAGAACCGTGT-GACGTACAC 48 consensus_371#1 GTTGTTGTTGTTGTTTAGACTATTGACGT-ATGT-GTATGACATAAGTATAGATGTATGC 58 * * ** ** * ** * ** * *** * ** * ** *** * consensus_371#0 GCGAAGAAGGAGACGACGACCGATGGTGGGGAAGCTGTAGTCCGGAGTTCTGTCGTATGG 108 consensus_371#1 ATACATGTGTATATT-TGATTGTATGTGAATAAATAAACATTTG----TTTATCATCTGC 113 * * * * ** * *** ** * * * * ** * ** consensus_371#0 TGCAAGCTGGCGAAGAGTATTGATGATAAGTCAACTGGAATGTTCGCAGAAAGCATGTGG 168 consensus_371#1 --CTGTCTGTCT--GTCTGTTTATAATTAG-CGGTGCAGATATTTAT-GTAAATACACA- 166 * *** * * * ** ** ** ** * ** ** * ** * consensus_371#0 TGGTTTCGTGTTGGCAGCTTCCATGAAGGTGGTCCAAACCCGTCGTTAAAGNDACCAAGT 228 consensus_371#1 TAGATTTGTGT--GTA-CTTTAGTGTAGATAGAT-GAGTGTATAGT---GTATAGTGTGT 219 * * ** **** * * *** ** ** * * * * ** * ** consensus_371#0 CGTCAGGTGTCTTTCGACGAATACGGCATTCAGTTACGCGTTCCGCTATCAAATCTCT-- 286 consensus_371#1 GTGTGTGTGTGTTTGTGCAAGCGTGTTGATCTATCATAAGTTATGTAGTGAATGTGTTAG 279 **** *** * * * ** * * *** * * ** * consensus_371#0 TTGAAAGTGTGTACGGGTCTG-CATATGGTAAAGTTACTG-TGAACGACAGACTTTAGTT 344 consensus_371#1 TTGGTGGTAACTGTGGACTTGGCGTGTAACAATCCCCTTGCTGGGCAAAACACACTAAAT 339 *** ** * ** ** * * * ** ** ** * * * ** ** * consensus_371#0 -TCCTGTACACGTGTAAACCTGAATCTTTTGACGTGATACCAACTGTGTGTGATGTGGCT 403 consensus_371#1 GTATTGGACG-GTGTTTAATCAGCTGGGCTAAATAGATAGTGAGC---TGTTAAGTTAAT 395 * ** ** **** * * * * **** * *** * ** * consensus_371#0 CTATCGAGATGGTATCATGTAGTCGCCGACTCTCGATGATCATCGTC 450 consensus_371#1 CA--CAGGGTGGGGTC-TATCACAACCTGTTCCATGTGCAGCTGA-- 437 * * * *** ** * * ** ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||