These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [AGCCCGGTACCCTGGCTTCCACATCATCTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCANGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTGCAAACCTGAAGACT] [+] EMBL CD067968 [AGCCCGGTACCCTGGCTTCCACATCATCTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCANGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTGCAAACCTGAAGACT] consensusID : consensus_374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [GGCTCCAGTGAAGTTGATCAGACCCGTCGTTGACGCTGAACGGTCTGTCAGTTTGCTGTTCGACCGAATCGGACAACAGATTAAGGCGTTCCTGCATCACAACTCTTGTTGCGAAAGTGTTCATGGTCTGTCGTATGTGGATGATGTTCCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCAACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGTTGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATTGGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGTAATTTTTCCTAATAAATATTTTTAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AI395781 [GGCTCCAGTGAAGTTGATCAGACCCGTCGTTGACGCTGAACGGTCTGTCAGTTTGCTGTTCGACCGAATCGGACAACAGATTAAGGCGTTCCTGCATCACAACTCTTGTTGCGAAAGTGTTCATGGTCTGTCGTATGTGGATGATGTTCCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCAACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGTTGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATTGGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGTAATTTTTCCTAATAAATATTTTTAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_374#0 AGCCCGGTACCCTGGCTTCCACATCATCTCCTCGTGGAAGAGATGGGATGACGACATGCG 60 consensus_374#1 ------------------------------------------------------------ consensus_374#0 ACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTT 120 consensus_374#1 ---------------------GGCTCCAGTGAAGTTGATCAGACCCGTCGTTG--ACGCT 37 ** * * * *** * * * ** * * consensus_374#0 GGAAAATCCATTCGCAT--TAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAG 178 consensus_374#1 GAACGGTCTGTCAGTTTGCTGTTCGACCGAATCGGACAACAGATTAAGGCGTTCCT---- 93 * * ** * * * * * *** *** * * ** ** *** *** consensus_374#0 AGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCC 238 consensus_374#1 ------GCATCACAACTCTTGTTGCGAAAGTGTTCA-TGGTCTGTCGTATGTGGATGATG 146 * *** ** * * ***** ** * * ** * consensus_374#0 TACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTT- 297 consensus_374#1 TTCCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGT--GGACCCAGTGTACAAACCTGA 204 * * * ** ** ** *** * * * *** ** ** * ** *** * consensus_374#0 ---CGCTCCTCAGGACATCAATGTGA--CGTCGAGTGAGAACCGTGTGACGGTACACGCG 352 consensus_374#1 AGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCA 264 * * * * * * ** *** *** * * * * * * ** consensus_374#0 AAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCG-GGAGTTCTGTCGTATG-GTGC 410 consensus_374#1 GAAGAGTGATCAAC-ATGGAAGGTCG--AGCTCATTCGCAGAGTTCAGTCAGTCGTATGC 321 * ** * ** * ** *** * ** * *** ****** *** * *** consensus_374#0 AGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTT 470 consensus_374#1 GATT-CCAGAGACAGTTGAT--CCGTTATCTGTTTCTGCTCA-GGTAGTTGGCAATACAT 377 * ** *** ***** ** * *** * ** * ** ** * * consensus_374#0 TGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTG 530 consensus_374#1 TGGTATTGGAGGCGCCATTGGAGA--AGCAACATGCGATTACT--CACTAGAAGAGTATA 433 ** * ******** *** ** ** * * * * * * ** * **** * consensus_374#0 GTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAG 590 consensus_374#1 ----------TGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGT----AA 479 **** ** *** * * * * ** * * * * consensus_374#0 CTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCANGTGGGAAGC 650 consensus_374#1 TTTTTCCTAATAAATATTTTTAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA-------- 531 * ** * *** * ** * * * * * * * consensus_374#0 GACTGCATGTTGAAGTTCCAGTGGACCCAGTGTGCAAACCTGAAGACT 698 consensus_374#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||