These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [TATCGGCCAGGAGCAATATGTTATGCAAATTGGAAATAAACCAGGTGAGTTAATAATTAATGTAGCTAAAGAACGATCTGTTGATGTTATATTGATTGGAAATCGTGGTTTAGGCGCATTCAGACGTACATTTTTAGGTTCTGTTAGTGAGTATATATTACATCATTGTAATGTACCATTTATTATTATTCCACCTTCTATTAGTTTATAAAATAATGTAAAGATGTTTATGTGCATGTTTGTTTGTTTGTGCTTCTCCTGCTTCTTCATTTATTTGAACATTATTATATACAGTTACATTTTTACATTCCGCTTGAATTGATGTAAGACAATAATATGAATATAGATTTGTACGTGATCATTGAATATTTTTACAAGATCAAATTTGCACTGTTTACTTGCACCCTTCCTATTGATTGCTCCCATCATTAACTTCACGGAAAGGATCCTCTGGCAGATGATCTTGTTTACTTAAGACGGTAGACACATATTGAAAGTTAA] [+] EMBL AI977790 [TATCGGCCAGGAGCAATATGTTATGCAAATTGGAAATAAACCAGGTGAGTTAATAATTAATGTAGCTAAAGAACGATCTGTTGATGTTATATTGATTGGAAATCGTGGTTTAGGCGCATTCAGACGTACATTTTTAGGTTCTGTTAGTGAGTATATATTACATCATTGTAATGTACCATTTATTATTATTCCACCTTCTATTAGTTTATAAAATAATGTAAAGATGTTTATGTGCATGTTTGTTTGTTTGTGCTTCTCCTGCTTCTTCATTTATTTGAACATTATTATATACAGTTACATTTTTACATTCCGCTTGAATTGATGTAAGACAATAATATGAATATAGATTTGTACGTGATCATTGAATATTTTTACAAGATCAAATTTGCACTGTTTACTTGCACCCTTCCTATTGATTGCTCCCATCATTAACTTCACGGAAAGGATCCTCTGGCAGATGATCTTGTTTACTTAAGACGGTAGACACATATTGAAAGTTAA] consensusID : consensus_3752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GCTTATTTTNTCCATGTGGTTGAAAGCACATTACTCCAAATCTACCGCAAATGAGTCATATGATCATGGNAAAAGAAATTGNAATACTAATTTGGGATAAAAATATTAAAATGTATTCCAGAAATTAGGTAAAATACTTGGAGACAAATTACATGTATGTATTTGAAAAACAGTAATATTCAAATGGAAATATGTTATGCAAATTGGAAAATAAACCAGGTGAGTTAATAATTAATGGTAGCTAAANAAACGATCTGGTTGAATGTTTATATTGAATTGGAAAATCGTGGG] [+] EMBL AA559753 [GCTTATTTTNTCCATGTGGTTGAAAGCACATTACTCCAAATCTACCGCAAATGAGTCATATGATCATGGNAAAAGAAATTGNAATACTAATTTGGGATAAAAATATTAAAATGTATTCCAGAAATTAGGTAAAATACTTGGAGACAAATTACATGTATGTATTTGAAAAACAGTAATATTCAAATGGAAATATGTTATGCAAATTGGAAAATAAACCAGGTGAGTTAATAATTAATGGTAGCTAAANAAACGATCTGGTTGAATGTTTATATTGAATTGGAAAATCGTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3752#0 TATCGGCCAGGAGCAATATGTTATGCAAATTGGAAATAAACCAGGTGAGTTAATAATTAA 60 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 TGTAGCTAAAGAACGATCTGTTGATGTTATATTGATTGGAAATCGTGGTTTAGGCGCATT 120 consensus_3752#1 ------------------------------------------------------------ consensus_3752#0 CAGACGTACATTTTTAGGTTCTGTTAGTGAGTATATATTACATCATTGTAATGTACCATT 180 consensus_3752#1 -------GCTTATTTTNTCCATGTGGTTGAAAGCACATTACTCCA----AATCTACCGCA 49 * * *** *** *** * ***** ** *** **** consensus_3752#0 TATTATTATTCCACCTTCTATTAGTTTATAAAATAATGTAAAGATGTTTATGTGCATGTT 240 consensus_3752#1 AATGAGT------CATATGATCATGGNAAAAGAAATTGNAATACTAATTTGGGATAAAAA 103 ** * * * * ** * * ** * * ** ** * ** * * consensus_3752#0 TGTTTGTTTGTGCTTCTCCTGCTTCTTCATTTATTTGAACATTATTATATACAGTTACAT 300 consensus_3752#1 TATTAAAATGTATTCCAGAAATTAGGTAAAATACTTGGAGACAAAT---TACATGTATGT 160 * ** *** * * * * * ** *** * * * * **** ** * consensus_3752#0 TTTTACATTCCGCTTGAATTGATGTAAGACAATAATATGAATATAG--ATTTGTACGTGA 358 consensus_3752#1 ATTTGAAAAACAGTAATATTCAAATGGAAATATGTTATGCAAATTGGAAAATAAACCAGG 220 *** * * * *** * * * ** **** * ** * * * ** * consensus_3752#0 TCATTGAATATTTTTACAAGATCAAATTTGCACTGTTTACTTGCACCCTTCCTATTGATT 418 consensus_3752#1 TGAGTTAATAATTAATGGTAGCTAAA--NAAACGATCTGGTTG-AATGTTTATATTGAAT 277 * * * **** ** *** ** * * *** * ** ****** * consensus_3752#0 GCTCCCATCATTAACTTCACGGAAAGGATCCTCTGGCAGATGATCTTGTTTACTTAAGAC 478 consensus_3752#1 TGGAAAATCGTGGG---------------------------------------------- 291 *** * consensus_3752#0 GGTAGACACATATTGAAAGTTAA 501 consensus_3752#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||