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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[CTGGAGGCCATCACAACTTTCTATGGTACGCTATTTGGCGTCTGCTGGTGCGAATGGGTACTGGGAACATGTGTTGTACGAACCTATGCTTTCTGGATTAAATTCAGATAATCGATCCAGCAAAGCATTTCATCCTCACAAAAAACCTTTACCTACTGATCCAGTGCATCCAACCAAAGCTGATTTTATACGAGAAAAGTATTTGTTTTTGGGATTTTTTAAGAGACCACGAAACGTTAACCATGATGATTTAAACCAGCAACTCCATGCCAGCGTAAGGACAGGAGTTTTAGAGACCAGTCTGTATTTACTTGCTTTGGGTGCAAATCCAAATTTTCTTCATCCAATCAAAGGCACAGCACCTATTCATGTTGCATGTCAATATGGTCAAATTGGTCAGGTAGAATTGCTGTTAGCTTATGGGGCAGATGTTTGTATTCGTAATTCATCTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTCGGTGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAGAGAACTTCTCGCANAAGACAAGAAAGGCTCATGAAACGCT]
[+] EMBL CD078855 [CTGGAGGCCATCACAACTTTCTATGGTACGCTATTTGGCGTCTGCTGGTGCGAATGGGTACTGGGAACATGTGTTGTACGAACCTATGCTTTCTGGATTAAATTCAGATAATCGATCCAGCAAAGCATTTCATCCTCACAAAAAACCTTTACCTACTGATCCAGTGCATCCAACCAAAGCTGATTTTATACGAGAAAAGTATTTGTTTTTGGGATTTTTTAAGAGACCACGAAACGTTAACCATGATGATTTAAACCAGCAACTCCATGCCAGCGTAAGGACAGGAGTTTTAGAGACCAGTCTGTATTTACTTGCTTTGGGTGCAAATCCAAATTTTCTTCATCCAATCAAAGGCACAGCACCTATTCATGTTGCATGTCAATATGGTCAAATTGGTCAGGTAGAATTGCTGTTAGCTTATGGGGCAGATGTTTGTATTCGTAATTCATCTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTCGGTGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAGAGAACTTCTCGCANAAGACAAGAAAGGCTCATGAAACGCT]
consensusID : consensus_3758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[CAAAATGGTCAAATTGGTCAGGTAAAATTGCTGTTAGCTTATGGGGCAAATGTTTGTATTCGTAATTCATTTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTGGGGGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAAAGAATTTTTTGCAAAAAACAAAAAAGGGTCATGAAACGTTAAAAAGCATTTTATCCAATCAGTGTTCATTAAAAGTTTGGCCGGAAACATCCCGAAAGTGAAAAATCACATGTAGAGTTTTTGATTGGGTGAATAATACCCCGCTATCATGTTTAGTAGCATTCCAGGATTTTCAGGAAAACCCAAGGATTTTTGAAATACTATAAAAACCCTATATTTTTTGTAAATGAATGAACCTTTGGAGTAAAGTGT]
[-] EMBL CD073316 [CAAAATGGTCAAATTGGTCAGGTAAAATTGCTGTTAGCTTATGGGGCAAATGTTTGTATTCGTAATTCATTTGGAAAAACTGTAATTGATGTTATTCAAAACTCAATTTTGGGGGATGTTCAAATTTTTGAATTAAGTGTTGAGGTGATCCAAAGAATTTTTTGCAAAAAACAAAAAAGGGTCATGAAACGTTAAAAAGCATTTTATCCAATCAGTGTTCATTAAAAGTTTGGCCGGAAACATCCCGAAAGTGAAAAATCACATGTAGAGTTTTTGATTGGGTGAATAATACCCCGCTATCATGTTTAGTAGCATTCCAGGATTTTCAGGAAAACCCAAGGATTTTTGAAATACTATAAAAACCCTATATTTTTTGTAAATGAATGAACCTTTGGAGTAAAGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3758#0 CTGGAGGCCATCACAACTTTCTATGGTACGCTATTTGGCGTCTGCTGGTGCGAATGGGTA 60
consensus_3758#1 ------------------------------------------------------------
consensus_3758#0 CTGGGAACATGTGTTGTACGAACCTATGCTTTCTGGATTAAATTCAGATAATCGATCCAG 120
consensus_3758#1 --------------------------------------CAAAATGGTCAAATTGGTCAGG 22
*** * *** * ** *
consensus_3758#0 CAAA---GCATTTCATCCTCACAAAAAACCTTTACCTAC-TGATCCAGTGCATCCAACCA 176
consensus_3758#1 TAAAATTGCTGTTAGCTTATGGGGCAAATGTTTGTATTCGTAATTCATTTGGAAAAACTG 82
*** ** ** *** *** * * * ** ** * ***
consensus_3758#0 AAGCTGATTTTATACGAGAAAAGTATTTGTTTTTGGGATTTTTTAAGAGACCACGAAACG 236
consensus_3758#1 TAATTGATGTTATTCAAAA------CTCAATTTTGGGGGATGTTCA-AATTTTTGAATTA 135
* **** **** * * * * ******* * ** * * ***
consensus_3758#0 TTAACCATGATGATTTAAACCAGCAACTCCATGCCAGCGTAAGGACAGGAGTTTTAGAGA 296
consensus_3758#1 AGTGTTGAGGTGATCCAAA----GAATTTTTTGCAAAAAACAAAAAAGGGTCATGAAACG 191
* **** *** ** * *** * * * *** * * *
consensus_3758#0 CCAGTCTGTATTTACTTGCTTTGGGTGCAAATCCAAATTTTCTTCATCCAATCAAAGGCA 356
consensus_3758#1 TTAAAAAGCATTT-TATCCAATCAGTGTTCATTAAAAGTTTGGCCG------GAAACATC 244
* * **** * * * *** ** *** *** * ***
consensus_3758#0 CAGCACCTATTCATGTTGCATGTCAATATGGTCAAATTGGTCAGGTAGAATTGCTGTTAG 416
consensus_3758#1 CCGAAAGTGAA-AAATCACATGTAGAGTT--TTTGATTGGGTGAATAATACC-CCGCTAT 300
* * * * * * ***** * * * ***** ** * * * **
consensus_3758#0 CTTATGGGGCAG-ATGTTTGTATTCGTAATTCATCTGGAAAAACTGTAATTGATGTTATT 475
consensus_3758#1 CATGTTTAGTAGCATTCCAGGATTTTCAGGAAAACCCAAGGATTTTTGA--AATACTATA 358
* * * * ** ** * *** * * * * * * * * ** ***
consensus_3758#0 CAAAACTCA-ATTTTCGGTGA-TGTTCAAATTTTTGAATTAA-GTGTTGAGGTGATCCAG 532
consensus_3758#1 AAAACCCTATATTTTTTGTAAATGAATGAACCTTTGGAGTAAAGTGT------------- 405
*** * * ***** ** * ** ** **** * *** ****
consensus_3758#0 AGAACTTCTCGCANAAGACAAGAAAGGCTCATGAAACGCT 572
consensus_3758#1 ----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||