cluster # 3768

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3768 cluster # 3768 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3768#0 length = 565 sequences # 1

consensus_3768#1 length = 265 sequences # 1

consensusID : consensus_3768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [TATTCATATGCATAATTATGAACATGTTTAATCCGATTGGAATTGGTTTCGAATTATGAATGCAATACTGTCAAATCATATAAATCTTTTGCATATACGTTAGATTATCTTGTATATGCATTTCATTATGTATTCAGTGAATATGTCTGTTCTATATACTTTAATCTCTTTGAATTTGAATTCAATATTGGCGCCATTTCTTGTATTTATTATATGGTCTTCCTTTCATTCATACTCCTTTTTTTTGTAACGATACATTGAGTCAATACAGTGAAAGAGTTGAGATTGTTTAGAACATTTTCAATGTTCAATTATTCTGTTGTATTTTACATTTACAACAACCAATTTTTTTTATTCATTCAAATGAATGATTGCTGAGTATTATTAGAGTGTGATTTTTATTCTTAAAAGATTTTCGTAAGGATCCACAACAGTCAGTGTAGCACAAACCGAAATGCCGACTAATTATAACACCAATGTATTACCTTGAAAACAAAAATCAATTTTCACTTCGACTAATAGTATTCACTCAAGTAAATAATCAAGAGAATTATGGAAAACATTC]

[+] EMBL CD152429             [TATTCATATGCATAATTATGAACATGTTTAATCCGATTGGAATTGGTTTCGAATTATGAATGCAATACTGTCAAATCATATAAATCTTTTGCATATACGTTAGATTATCTTGTATATGCATTTCATTATGTATTCAGTGAATATGTCTGTTCTATATACTTTAATCTCTTTGAATTTGAATTCAATATTGGCGCCATTTCTTGTATTTATTATATGGTCTTCCTTTCATTCATACTCCTTTTTTTTGTAACGATACATTGAGTCAATACAGTGAAAGAGTTGAGATTGTTTAGAACATTTTCAATGTTCAATTATTCTGTTGTATTTTACATTTACAACAACCAATTTTTTTTATTCATTCAAATGAATGATTGCTGAGTATTATTAGAGTGTGATTTTTATTCTTAAAAGATTTTCGTAAGGATCCACAACAGTCAGTGTAGCACAAACCGAAATGCCGACTAATTATAACACCAATGTATTACCTTGAAAACAAAAATCAATTTTCACTTCGACTAATAGTATTCACTCAAGTAAATAATCAAGAGAATTATGGAAAACATTC]




>consensus_3768#0
TATTCATATGCATAATTATGAACATGTTTAATCCGATTGGAATTGGTTTCGAATTATGAA
TGCAATACTGTCAAATCATATAAATCTTTTGCATATACGTTAGATTATCTTGTATATGCA
TTTCATTATGTATTCAGTGAATATGTCTGTTCTATATACTTTAATCTCTTTGAATTTGAA
TTCAATATTGGCGCCATTTCTTGTATTTATTATATGGTCTTCCTTTCATTCATACTCCTT
TTTTTTGTAACGATACATTGAGTCAATACAGTGAAAGAGTTGAGATTGTTTAGAACATTT
TCAATGTTCAATTATTCTGTTGTATTTTACATTTACAACAACCAATTTTTTTTATTCATT
CAAATGAATGATTGCTGAGTATTATTAGAGTGTGATTTTTATTCTTAAAAGATTTTCGTA
AGGATCCACAACAGTCAGTGTAGCACAAACCGAAATGCCGACTAATTATAACACCAATGT
ATTACCTTGAAAACAAAAATCAATTTTCACTTCGACTAATAGTATTCACTCAAGTAAATA
ATCAAGAGAATTATGGAAAACATTC

consensusID : consensus_3768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [ATATTCATATGTATAAATTATGAACATGTNTAAATCCGATGGAAATGGGTTCNAAATATTAATTCCAATACTTGGCAAACAATTAATCTTTTGCCTTGTCCGTAAAATAACCTGGATTTTCCTTTCAATAAGGATTCCATGGAAAATGCCGGTCCAATATACTTTAATCTCTTTGAATTTGAATTCAATATTGGCGCCGTTACTTGTATTTATTATATGGTCTGCCTCTTTTTGTAACAATACAATGAGTGAATACAGTAAAAGA]

[+] EMBL CD152540             [ATATTCATATGTATAAATTATGAACATGTNTAAATCCGATGGAAATGGGTTCNAAATATTAATTCCAATACTTGGCAAACAATTAATCTTTTGCCTTGTCCGTAAAATAACCTGGATTTTCCTTTCAATAAGGATTCCATGGAAAATGCCGGTCCAATATACTTTAATCTCTTTGAATTTGAATTCAATATTGGCGCCGTTACTTGTATTTATTATATGGTCTGCCTCTTTTTGTAACAATACAATGAGTGAATACAGTAAAAGA]




>consensus_3768#1
ATATTCATATGTATAAATTATGAACATGTNTAAATCCGATGGAAATGGGTTCNAAATATT
AATTCCAATACTTGGCAAACAATTAATCTTTTGCCTTGTCCGTAAAATAACCTGGATTTT
CCTTTCAATAAGGATTCCATGGAAAATGCCGGTCCAATATACTTTAATCTCTTTGAATTT
GAATTCAATATTGGCGCCGTTACTTGTATTTATTATATGGTCTGCCTCTTTTTGTAACAA
TACAATGAGTGAATACAGTAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3768#0      -TATTCATATGCATAA-TTATGAACATGTTTAA-TCCGATTGGAATTGGTTTCGAATTAT 57
consensus_3768#1      ATATTCATATGTATAAATTATGAACATGTNTAAATCCGATGGAAATGGGTTCNAAATATT 60
                       ********** **** ************ *** ****** * *** ****   ***  *

consensus_3768#0      GAATGCAATACTGTCAAATCATATAAATCTTTTGCATATACGTTAGATTATCTTGTATAT 117
consensus_3768#1      AATTCCAATACTTGGCAAACA-ATTAATCTTTTGCCTTGTCCGTAAAATAACCTGGATTT 119
                       * * *******    ** ** ** ********** *   *  ** * ** * ** ** *

consensus_3768#0      GCATTTCATTATGTATTCAGTG-AATATGTCTGTTCTATATACTTTAATCTCTTTGAATT 176
consensus_3768#1      TCCTTTCAATAAGGATTCCATGGAAAATGCCGGTCCAATATACTTTAATCTCTTTGAATT 179
                       * ***** ** * ****  ** ** *** * ** * ***********************

consensus_3768#0      TGAATTCAATATTGGCGCCATTTCTTGTATTTATTATATGGTCTTCCTTTCATTCATACT 236
consensus_3768#1      TGAATTCAATATTGGCGCCGTTACTTGTATTTATTATATGGTCTGCCTCT---------- 229
                      ******************* ** ********************* *** *          

consensus_3768#0      CCTTTTTTTTGTAACGATACATTGAGTCAATACAGTGAAAGAGTTGAGATTGTTTAGAAC 296
consensus_3768#1      ------TTTTGTAACAATACAATGAGTGAATACAGTAAAAGA------------------ 265
                            ********* ***** ***** ******** *****                  

consensus_3768#0      ATTTTCAATGTTCAATTATTCTGTTGTATTTTACATTTACAACAACCAATTTTTTTTATT 356
consensus_3768#1      ------------------------------------------------------------
                                                                                  

consensus_3768#0      CATTCAAATGAATGATTGCTGAGTATTATTAGAGTGTGATTTTTATTCTTAAAAGATTTT 416
consensus_3768#1      ------------------------------------------------------------
                                                                                  

consensus_3768#0      CGTAAGGATCCACAACAGTCAGTGTAGCACAAACCGAAATGCCGACTAATTATAACACCA 476
consensus_3768#1      ------------------------------------------------------------
                                                                                  

consensus_3768#0      ATGTATTACCTTGAAAACAAAAATCAATTTTCACTTCGACTAATAGTATTCACTCAAGTA 536
consensus_3768#1      ------------------------------------------------------------
                                                                                  

consensus_3768#0      AATAATCAAGAGAATTATGGAAAACATTC 565
consensus_3768#1      -----------------------------