cluster # 3775

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3775 cluster # 3775 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3775#0 length = 550 sequences # 1

consensus_3775#1 length = 444 sequences # 1

consensusID : consensus_3775#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [GACAACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAATTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAGGCCACTGTCCTTTAGGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGTTCGCTGCAGTGTCGTCAAACAAGACTTTGACCACCTATTTCAGAATAGACTTGCTATATGTTGAGCTTGTTTCCATCTTCTGTCATACTGTGTCGTCAAGTCTGCTCCTTCTAATAGTAGTAGTTTGCTCGGTCTATTGCACATACAGGAC]

[+] EMBL AI977020             [GACAACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAATTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAGGCCACTGTCCTTTAGGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGTTCGCTGCAGTGTCGTCAAACAAGACTTTGACCACCTATTTCAGAATAGACTTGCTATATGTTGAGCTTGTTTCCATCTTCTGTCATACTGTGTCGTCAAGTCTGCTCCTTCTAATAGTAGTAGTTTGCTCGGTCTATTGCACATACAGGAC]




>consensus_3775#0
GACAACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAATTT
GTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGT
AATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGAT
TTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTT
ACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGAC
GACTGCTTTAGGCCACTGTCCTTTAGGGGATTCAGCTTTTACTAATCATACCAGATCAAC
CACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGTTCGCTGCAGTGTCGTCAAACA
AGACTTTGACCACCTATTTCAGAATAGACTTGCTATATGTTGAGCTTGTTTCCATCTTCT
GTCATACTGTGTCGTCAAGTCTGCTCCTTCTAATAGTAGTAGTTTGCTCGGTCTATTGCA
CATACAGGAC

consensusID : consensus_3775#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [ACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAAGTACGTTCCAACTAATAATAACATGGCCAGTTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAAGCCACTGTCCTCTAAGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGGTCGCTGCAGTGTCGTCAAA]

[+] EMBL CD127457             [ACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAAGTACGTTCCAACTAATAATAACATGGCCAGTTTGTCGATAGTTGATTTAACATATGAGATAGAAGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAAGCCACTGTCCTCTAAGGGATTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTCCAGGGTCGCTGCAGTGTCGTCAAA]




>consensus_3775#1
ACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAAGTACGTT
CCAACTAATAATAACATGGCCAGTTTGTCGATAGTTGATTTAACATATGAGATAGAAGAA
AAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGAAGTG
GTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATCTGTC
AGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAATCCA
TCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAAGCCACTGTCCTCTAAGGGATTCA
GCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCATTTC
CAGGGTCGCTGCAGTGTCGTCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3775#0      GACAACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAA--- 57
consensus_3775#1      ----ACGACAACAGTCAGACGTAAAAATGACGGATTCGAAATGGCTGTTCATGTAAAGTA 56
                          *****************************************************   

consensus_3775#0      ---------------------------TTTGTCGATAGTTGATTTAACATATGAGATAGA 90
consensus_3775#1      CGTTCCAACTAATAATAACATGGCCAGTTTGTCGATAGTTGATTTAACATATGAGATAGA 116
                                                 *********************************

consensus_3775#0      AGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGA 150
consensus_3775#1      AGAAAAGAGAATGAACCCTGAATAATAAGTAATCTCAGTCCTATACGAAATGAAGCCTGA 176
                      ************************************************************

consensus_3775#0      AGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATC 210
consensus_3775#1      AGTGGTTCCATCAGCTCCATATCCGAAGATTTCTGGATTTCTCCTTCCAACTTTCATATC 236
                      ************************************************************

consensus_3775#0      TGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAA 270
consensus_3775#1      TGTCAGATATCCCTTTCAACCAAACCTTTTACTGTTAAAATAACTAATCGTGTGTACCAA 296
                      ************************************************************

consensus_3775#0      TCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAGGCCACTGTCCTTTAGGGGA 330
consensus_3775#1      TCCATCATATCCTGCTTCTGTGCTCACGACGACTGCTTTAAGCCACTGTCCTCTAAGGGA 356
                      **************************************** *********** ** ****

consensus_3775#0      TTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCA 390
consensus_3775#1      TTCAGCTTTTACTAATCATACCAGATCAACCACCCTTATATTCGGTTTACAGTCATACCA 416
                      ************************************************************

consensus_3775#0      TTTCCAGGTTCGCTGCAGTGTCGTCAAACAAGACTTTGACCACCTATTTCAGAATAGACT 450
consensus_3775#1      TTTCCAGGGTCGCTGCAGTGTCGTCAAA-------------------------------- 444
                      ******** *******************                                

consensus_3775#0      TGCTATATGTTGAGCTTGTTTCCATCTTCTGTCATACTGTGTCGTCAAGTCTGCTCCTTC 510
consensus_3775#1      ------------------------------------------------------------
                                                                                  

consensus_3775#0      TAATAGTAGTAGTTTGCTCGGTCTATTGCACATACAGGAC 550
consensus_3775#1      ----------------------------------------