These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [ATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGACAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACGTAGGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAACGCCACAGAGAAAATGAATTGTCGAATTTGAACACATAAACACCAACACCTGGATACTGATGGGTACCACAATAAACTTCTGTATGACAATCCCTTCTATAGATTGGTATAAGTTCATCAATAGGTAAACGCTGTTGTAATGACTTTTTGCCTAATTCCAAATCATGAGATTCTTTATTTTCGTTTTTAGGCGACGTTTGCTCCACAGAATTTCCACTATTAGGTCCTTCTTCATCCTC] [+] EMBL CD178455 [ATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGACAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACGTAGGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAACGCCACAGAGAAAATGAATTGTCGAATTTGAACACATAAACACCAACACCTGGATACTGATGGGTACCACAATAAACTTCTGTATGACAATCCCTTCTATAGATTGGTATAAGTTCATCAATAGGTAAACGCTGTTGTAATGACTTTTTGCCTAATTCCAAATCATGAGATTCTTTATTTTCGTTTTTAGGCGACGTTTGCTCCACAGAATTTCCACTATTAGGTCCTTCTTCATCCTC] consensusID : consensus_3868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [ACATTTACTTTTCATGAAGTGTTGACCAGAAAAAAATTCATTATTAGAAAATACCATAAGTGAAATGAATGTTGAAAAAAAAGCAATTTAATTCATCCCAACATAAAATACTTATATGTTGTAAAACAGAACAAGCCAAAATATGAAGGATACTTTAGGTAGAAGGTAATCAATTATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATATATATATATATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGGCAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACCTACGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAAAGCCACAGAGAAAATGAATTGTCGAATT] [+] EMBL AI067228 [ACATTTACTTTTCATGAAGTGTTGACCAGAAAAAAATTCATTATTAGAAAATACCATAAGTGAAATGAATGTTGAAAAAAAAGCAATTTAATTCATCCCAACATAAAATACTTATATGTTGTAAAACAGAACAAGCCAAAATATGAAGGATACTTTAGGTAGAAGGTAATCAATTATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATATATATATATATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGGCAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACCTACGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAAAGCCACAGAGAAAATGAATTGTCGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3868#0 ------------------------------------------------------------ consensus_3868#1 ACATTTACTTTTCATGAAGTGTTGACCAGAAAAAAATTCATTATTAGAAAATACCATAAG 60 consensus_3868#0 ------------------------------------------------------------ consensus_3868#1 TGAAATGAATGTTGAAAAAAAAGCAATTTAATTCATCCCAACATAAAATACTTATATGTT 120 consensus_3868#0 -------------------------------------------------------ATGCA 5 consensus_3868#1 GTAAAACAGAACAAGCCAAAATATGAAGGATACTTTAGGTAGAAGGTAATCAATTATGCA 180 ***** consensus_3868#0 GAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATAT- 64 consensus_3868#1 GAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATA 240 *********************************************************** consensus_3868#0 -------------------------------TGAGATCAGAAGCAATTTGCAAAATAAAA 93 consensus_3868#1 TATATATATATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAA 300 ***************************** consensus_3868#0 CAATGGGAAGACAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACGTAGGGA 153 consensus_3868#1 CAATGGGAAGGCAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACCTACGGA 360 ********** ****************************************** ** *** consensus_3868#0 ATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAG 213 consensus_3868#1 ATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAG 420 ************************************************************ consensus_3868#0 TATAGAAGATACGGTAATACAGCCACTTAGAACGCCACAGAGAAAATGAATTGTCGAATT 273 consensus_3868#1 TATAGAAGATACGGTAATACAGCCACTTAGAAAGCCACAGAGAAAATGAATTGTCGAATT 480 ******************************** *************************** consensus_3868#0 TGAACACATAAACACCAACACCTGGATACTGATGGGTACCACAATAAACTTCTGTATGAC 333 consensus_3868#1 ------------------------------------------------------------ consensus_3868#0 AATCCCTTCTATAGATTGGTATAAGTTCATCAATAGGTAAACGCTGTTGTAATGACTTTT 393 consensus_3868#1 ------------------------------------------------------------ consensus_3868#0 TGCCTAATTCCAAATCATGAGATTCTTTATTTTCGTTTTTAGGCGACGTTTGCTCCACAG 453 consensus_3868#1 ------------------------------------------------------------ consensus_3868#0 AATTTCCACTATTAGGTCCTTCTTCATCCTC 484 consensus_3868#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||