These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [TAAAAAGCAATCTTCGAATATTCAGTTGTCCTCTAAAATGTCAACTGATTCTTCCACCATTGATGATGTTAGCGATAAATGGTTGAGTCACTGTCGTCCAGTACCATTCCGTTTAACGCCACATTTAGCTGGTCTTGTTTGTTTACCTGGAGCTCCAGCAAAAGTTGGTCCTTTCGCAGCTAGTTTCACTACAACTGCAAAAGCTTTAATGAATGCACCATATGATCATAGTTTAATCAGTCTTTATAGAACACTCTTACGTCGTGATTATATTCTATGGCATCGAGGCAGACAATCTTCTATCTATGCATATCAATTACTTATGAGTGAGCANGATGAAACGATNCANNCATC] [+] EMBL CD181294 [TAAAAAGCAATCTTCGAATATTCAGTTGTCCTCTAAAATGTCAACTGATTCTTCCACCATTGATGATGTTAGCGATAAATGGTTGAGTCACTGTCGTCCAGTACCATTCCGTTTAACGCCACATTTAGCTGGTCTTGTTTGTTTACCTGGAGCTCCAGCAAAAGTTGGTCCTTTCGCAGCTAGTTTCACTACAACTGCAAAAGCTTTAATGAATGCACCATATGATCATAGTTTAATCAGTCTTTATAGAACACTCTTACGTCGTGATTATATTCTATGGCATCGAGGCAGACAATCTTCTATCTATGCATATCAATTACTTATGAGTGAGCANGATGAAACGATNCANNCATC] consensusID : consensus_3869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [TACTGGCCGACGATATACAAACCATTTATCGCTAACATCATCAATGGTGGAAGAATCAGTTGACATTTTAGAAGACAACTGAATATTCGAAGATTGCTTTTTACCAGATTTCTCCAGCTTCTGTATAAGCATGGATTGATTGAAACAGGAAATGAAGTATGGTTGATTAAATGCTTTTTCCGAATTCAGTAAATGAGATTGTTCTGACGAAGAATTATCACCCGGCAATCCAAAACAGACATGATGCGCTTCAATATGTCCAGAGCGTGGATCAATCACTAAACAACCTGGATGAAGAGGTGTTAAGTGAAACAATCGTTCTATAAGCCAT] [+] EMBL CD178459 [TACTGGCCGACGATATACAAACCATTTATCGCTAACATCATCAATGGTGGAAGAATCAGTTGACATTTTAGAAGACAACTGAATATTCGAAGATTGCTTTTTACCAGATTTCTCCAGCTTCTGTATAAGCATGGATTGATTGAAACAGGAAATGAAGTATGGTTGATTAAATGCTTTTTCCGAATTCAGTAAATGAGATTGTTCTGACGAAGAATTATCACCCGGCAATCCAAAACAGACATGATGCGCTTCAATATGTCCAGAGCGTGGATCAATCACTAAACAACCTGGATGAAGAGGTGTTAAGTGAAACAATCGTTCTATAAGCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3869#0 TAAAAAGCAATCTTCGAATATTCAGTTGTCCTCTAAAATGTCAACTGATTCTT-CCACCA 59 consensus_3869#1 -----------------------TACTGGCCGACGATATACAAACCATTTATCGCTAACA 37 ** ** * ** *** ** * * * ** consensus_3869#0 TTGATGATGTTAGCGATAAATGGTTGAGTCACTGTCGTCCAGTACCATTCCGTTTAACGC 119 consensus_3869#1 TCATCAATGGTGG-AAGAATCAGTTGA--CATTTTAGAAGACAACTGAATATTCGAAGAT 94 * *** * * * ** ***** ** * * * * ** * ** consensus_3869#0 CACATTTAGCTGGTCTTGTTTGTTTACCTGGAGCTCCAGCAAAAGTTGGTCCTTTCGCAG 179 consensus_3869#1 TGCTTTTTACCAG----ATTTCTCCAGCTTCTGTATAAGCATGGATTGATTGAAACAGGA 150 * *** * * *** * * ** * **** *** * * consensus_3869#0 CTAGTTTCACTACAACTGCAAAAGCTTTAATGAATGCACCATATGATCATAGTTTAATCA 239 consensus_3869#1 AATGAAGTATGGTTGATTAAATGCTTTTTCCGAATTCAGTAAATGAGATTGTTCTGACGA 210 * * * ** *** **** ** * **** * * * * * consensus_3869#0 GTCTTTATAG---AACACTCTTACGTCGTGATTATATTCTATGGCAT---CGAGGCAGA- 292 consensus_3869#1 AGAATTATCACCCGGCAATCCAAAACAGACATGATGCGCTTCAATATGTCCAGAGCGTGG 270 **** ** ** * * ** ** ** ** * ** consensus_3869#0 --CAATCTTCTATCTATGCATATCAATTACTTATGAGTGAGCANGATGAAACGATNCANN 350 consensus_3869#1 ATCAATCACTAAACAACCTGGATGAAGAGGTGTTAAGTGAA-ACAATCGTTCTATA-AGC 328 ***** * * * ** ** * * ***** * ** * ** * consensus_3869#0 CATC 354 consensus_3869#1 CAT- 331 *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||