cluster # 3869

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Schistosoma mansoni
cluster # 3869 cluster # 3869 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3869#0 length = 354 sequences # 1

consensus_3869#1 length = 331 sequences # 1

consensusID : consensus_3869#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 354
fasta sequence

                              [TAAAAAGCAATCTTCGAATATTCAGTTGTCCTCTAAAATGTCAACTGATTCTTCCACCATTGATGATGTTAGCGATAAATGGTTGAGTCACTGTCGTCCAGTACCATTCCGTTTAACGCCACATTTAGCTGGTCTTGTTTGTTTACCTGGAGCTCCAGCAAAAGTTGGTCCTTTCGCAGCTAGTTTCACTACAACTGCAAAAGCTTTAATGAATGCACCATATGATCATAGTTTAATCAGTCTTTATAGAACACTCTTACGTCGTGATTATATTCTATGGCATCGAGGCAGACAATCTTCTATCTATGCATATCAATTACTTATGAGTGAGCANGATGAAACGATNCANNCATC]

[+] EMBL CD181294             [TAAAAAGCAATCTTCGAATATTCAGTTGTCCTCTAAAATGTCAACTGATTCTTCCACCATTGATGATGTTAGCGATAAATGGTTGAGTCACTGTCGTCCAGTACCATTCCGTTTAACGCCACATTTAGCTGGTCTTGTTTGTTTACCTGGAGCTCCAGCAAAAGTTGGTCCTTTCGCAGCTAGTTTCACTACAACTGCAAAAGCTTTAATGAATGCACCATATGATCATAGTTTAATCAGTCTTTATAGAACACTCTTACGTCGTGATTATATTCTATGGCATCGAGGCAGACAATCTTCTATCTATGCATATCAATTACTTATGAGTGAGCANGATGAAACGATNCANNCATC]




>consensus_3869#0
TAAAAAGCAATCTTCGAATATTCAGTTGTCCTCTAAAATGTCAACTGATTCTTCCACCAT
TGATGATGTTAGCGATAAATGGTTGAGTCACTGTCGTCCAGTACCATTCCGTTTAACGCC
ACATTTAGCTGGTCTTGTTTGTTTACCTGGAGCTCCAGCAAAAGTTGGTCCTTTCGCAGC
TAGTTTCACTACAACTGCAAAAGCTTTAATGAATGCACCATATGATCATAGTTTAATCAG
TCTTTATAGAACACTCTTACGTCGTGATTATATTCTATGGCATCGAGGCAGACAATCTTC
TATCTATGCATATCAATTACTTATGAGTGAGCANGATGAAACGATNCANNCATC

consensusID : consensus_3869#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [TACTGGCCGACGATATACAAACCATTTATCGCTAACATCATCAATGGTGGAAGAATCAGTTGACATTTTAGAAGACAACTGAATATTCGAAGATTGCTTTTTACCAGATTTCTCCAGCTTCTGTATAAGCATGGATTGATTGAAACAGGAAATGAAGTATGGTTGATTAAATGCTTTTTCCGAATTCAGTAAATGAGATTGTTCTGACGAAGAATTATCACCCGGCAATCCAAAACAGACATGATGCGCTTCAATATGTCCAGAGCGTGGATCAATCACTAAACAACCTGGATGAAGAGGTGTTAAGTGAAACAATCGTTCTATAAGCCAT]

[+] EMBL CD178459             [TACTGGCCGACGATATACAAACCATTTATCGCTAACATCATCAATGGTGGAAGAATCAGTTGACATTTTAGAAGACAACTGAATATTCGAAGATTGCTTTTTACCAGATTTCTCCAGCTTCTGTATAAGCATGGATTGATTGAAACAGGAAATGAAGTATGGTTGATTAAATGCTTTTTCCGAATTCAGTAAATGAGATTGTTCTGACGAAGAATTATCACCCGGCAATCCAAAACAGACATGATGCGCTTCAATATGTCCAGAGCGTGGATCAATCACTAAACAACCTGGATGAAGAGGTGTTAAGTGAAACAATCGTTCTATAAGCCAT]




>consensus_3869#1
TACTGGCCGACGATATACAAACCATTTATCGCTAACATCATCAATGGTGGAAGAATCAGT
TGACATTTTAGAAGACAACTGAATATTCGAAGATTGCTTTTTACCAGATTTCTCCAGCTT
CTGTATAAGCATGGATTGATTGAAACAGGAAATGAAGTATGGTTGATTAAATGCTTTTTC
CGAATTCAGTAAATGAGATTGTTCTGACGAAGAATTATCACCCGGCAATCCAAAACAGAC
ATGATGCGCTTCAATATGTCCAGAGCGTGGATCAATCACTAAACAACCTGGATGAAGAGG
TGTTAAGTGAAACAATCGTTCTATAAGCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3869#0      TAAAAAGCAATCTTCGAATATTCAGTTGTCCTCTAAAATGTCAACTGATTCTT-CCACCA 59
consensus_3869#1      -----------------------TACTGGCCGACGATATACAAACCATTTATCGCTAACA 37
                                                ** **    * **   ***   ** *  * * **

consensus_3869#0      TTGATGATGTTAGCGATAAATGGTTGAGTCACTGTCGTCCAGTACCATTCCGTTTAACGC 119
consensus_3869#1      TCATCAATGGTGG-AAGAATCAGTTGA--CATTTTAGAAGACAACTGAATATTCGAAGAT 94
                      *     *** * *  * **   *****  ** * * *   *  **       *  **   

consensus_3869#0      CACATTTAGCTGGTCTTGTTTGTTTACCTGGAGCTCCAGCAAAAGTTGGTCCTTTCGCAG 179
consensus_3869#1      TGCTTTTTACCAG----ATTTCTCCAGCTTCTGTATAAGCATGGATTGATTGAAACAGGA 150
                        * ***  *  *     *** *  * **   *    ****    *** *     *    

consensus_3869#0      CTAGTTTCACTACAACTGCAAAAGCTTTAATGAATGCACCATATGATCATAGTTTAATCA 239
consensus_3869#1      AATGAAGTATGGTTGATTAAATGCTTTTTCCGAATTCAGTAAATGAGATTGTTCTGACGA 210
                         *    *       *  **    ***   **** **  * ****   *  * * *  *

consensus_3869#0      GTCTTTATAG---AACACTCTTACGTCGTGATTATATTCTATGGCAT---CGAGGCAGA- 292
consensus_3869#1      AGAATTATCACCCGGCAATCCAAAACAGACATGATGCGCTTCAATATGTCCAGAGCGTGG 270
                          ****       ** **  *    *  ** **   **     **   *   **    

consensus_3869#0      --CAATCTTCTATCTATGCATATCAATTACTTATGAGTGAGCANGATGAAACGATNCANN 350
consensus_3869#1      ATCAATCACTAAACAACCTGGATGAAGAGGTGTTAAGTGAA-ACAATCGTTCTATA-AGC 328
                        *****    * * *     ** **    *  * *****  *  **    * **  *  

consensus_3869#0      CATC 354
consensus_3869#1      CAT- 331
                      ***