These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [ATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGTGGTTTAGCTTGGTTAGAAGGTGGTTTATTTCTCCGTCCATATGATTTACCTCCAATATCGGCAATAACTGATTCATCAAAGTGTCCACAATTTTGGCATCTTGATGAAGTTGTCTACGATGAGGCTAGACGTGTTATTCTTCCATTGGACGCTTGGATTGGTAGATGTATGGTGTTATGCCCTTCAGCATAAAGAGTTGGCAGACCTGCTGATTTACTATACACAGCACATATAAAAGAATTTATGCCATCACTGAAAAATTACAATCTGAATGATTCCAATCCTACTACAAATCAGTTTCAATATTTCTTTGTTTGTGAAAAATTATTTGAACAATCATCAGTTGATAATCATACTTGTAGATTTGATGAAATATCTCCTGGTTACTTAAAA] [+] EMBL CD190834 [ATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGTGGTTTAGCTTGGTTAGAAGGTGGTTTATTTCTCCGTCCATATGATTTACCTCCAATATCGGCAATAACTGATTCATCAAAGTGTCCACAATTTTGGCATCTTGATGAAGTTGTCTACGATGAGGCTAGACGTGTTATTCTTCCATTGGACGCTTGGATTGGTAGATGTATGGTGTTATGCCCTTCAGCATAAAGAGTTGGCAGACCTGCTGATTTACTATACACAGCACATATAAAAGAATTTATGCCATCACTGAAAAATTACAATCTGAATGATTCCAATCCTACTACAAATCAGTTTCAATATTTCTTTGTTTGTGAAAAATTATTTGAACAATCATCAGTTGATAATCATACTTGTAGATTTGATGAAATATCTCCTGGTTACTTAAAA] consensusID : consensus_3917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GGTGGAGGTAATACAGGCGAGGTAGATGTGAAAGGTGAAGATGATCGAGAAGTTGATGCTCCTTATATATGTCCAGTGTGCTTGAAGTTGGATAATTTAACAAAAGAATATCCTCGTTCATTATCTGCAGCGATGAGTTTAAACGATGTAGATGCTGTATTTGACTTACAAGATACACTAGTGAAAGGTGAACATGAATTTTGGACATTGGGTAGTCCTGATGGAACTTGTCAAATACGTACAGATGATTATGCATTTGTTAATCGTTTCTGGTTAAATCATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGGTTAAAAGTTTTTTTTTATTGTAGTAGTAGTTTTTGCTTTTTTTGGATTGTTCAAGTGGACAGGAGTTCTCAACAGGACACCGGCCTTGATCAAGTTCTCATGCTCATCA] [-] EMBL CD127906 [GGTGGAGGTAATACAGGCGAGGTAGATGTGAAAGGTGAAGATGATCGAGAAGTTGATGCTCCTTATATATGTCCAGTGTGCTTGAAGTTGGATAATTTAACAAAAGAATATCCTCGTTCATTATCTGCAGCGATGAGTTTAAACGATGTAGATGCTGTATTTGACTTACAAGATACACTAGTGAAAGGTGAACATGAATTTTGGACATTGGGTAGTCCTGATGGAACTTGTCAAATACGTACAGATGATTATGCATTTGTTAATCGTTTCTGGTTAAATCATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGGTTAAAAGTTTTTTTTTATTGTAGTAGTAGTTTTTGCTTTTTTTGGATTGTTCAAGTGGACAGGAGTTCTCAACAGGACACCGGCCTTGATCAAGTTCTCATGCTCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3917#0 -ATCTTAATATTTCA--CAAGATA--TATCAAAGGGTACAACAATCAATGTATCAATGAA 55 consensus_3917#1 GGTGGAGGTAATACAGGCGAGGTAGATGTGAAAGGTGAAGATGATCGAGAAGTTGATGCT 60 * ** * ** * ** ** * * ***** * * *** * * *** consensus_3917#0 TGTTAAACAACTTT--TAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGT 113 consensus_3917#1 CCTTATATATGTCCAGTGTGCTTGAAGTTGGATAATTTAACAAAA---GAATATCCTCGT 117 *** * * * * * * * * *** * *** **** consensus_3917#0 ATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGTGGTTTAGCTTGGTTAGAAGGT 173 consensus_3917#1 -TCATTATCTGCAGCGATGAGTT--TAAACGATGTAGATGCTGTATTTGACTTACAAGAT 174 * *** * * * ** ** ** ***** ** * ** * *** *** * consensus_3917#0 GGTTTATTTCTCCGTCCATATGATTTACCTCCAATATCGGCAATAACTGATTCATCAAAG 233 consensus_3917#1 ACACTAGTGAAAGGTGAACATGAATT---TTGGACATTGGGTAGTCCTGATGGAACT--- 228 ** * ** * **** ** * * ** ** * ***** * * consensus_3917#0 TGTCCACAATTTTGGCATCTTGATGAAGTTGTCTACGATGA--GGCTAGA-CGTGTTATT 290 consensus_3917#1 TGTCAAATACGTACAGATGATTATGCATTTGTTAATCGTTTCTGGTTAAATCATCTTAAT 288 **** * * * ** * *** * **** * * ** ** * * * *** * consensus_3917#0 CTTCCATTGGACGCTTGGATTGGTAGATGTATGGTGTTATGCCCTTCAGCAT-AAAGAGT 349 consensus_3917#1 ATTTCACAAGATATATCAAAGGGTACAACAAT--CAATGTATCAATGAATGTTAAACAAC 346 ** ** ** * * **** * ** * * * * * * *** * consensus_3917#0 TGGCAGACCTGCTGATTTACTATACACAGC-ACATATAAAAGAATTTATGCCATCACTGA 408 consensus_3917#1 TTTTAGATCAATC--CCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCG 404 * *** * *** ** *** * ** * * * ** * consensus_3917#0 AAAATTACAATCT--GAATGATTCCAATCCTAC--TACAAATCAGTTTCAATATT--TCT 462 consensus_3917#1 AATTTATCGATTATGGAAGGATGTCAGGTTAAAAGTTTTTTTTTATTGTAGTAGTAGTTT 464 ** * * ** *** *** ** * * * ** * ** * * * consensus_3917#0 TTGTTTGTGAAAAATTATTTGAACAATCATCAGTTGATAATCATACTTGTAGATTTGATG 522 consensus_3917#1 TTGCTTTTTTTGGATTGTTCAAGTGGACAGGAGTTCTCAACAGGACAC-CGGCCTTGATC 523 *** ** * *** ** * ** **** ** ** * ***** consensus_3917#0 AAATATCTCCTGGTTACTTAAAA 545 consensus_3917#1 AAGT-TCTCATGCTCATCA---- 541 ** * **** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||