cluster # 3922

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Schistosoma mansoni
cluster # 3922 cluster # 3922 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3922#0 length = 582 sequences # 1

consensus_3922#1 length = 340 sequences # 1

consensusID : consensus_3922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGTGCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCAAGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAAAAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGGCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAAAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC]

[+] EMBL SMAA69314            [AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGTGCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCAAGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAAAAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGGCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAAAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC]




>consensus_3922#0
AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGT
GCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCA
AGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTT
ATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAA
AAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGG
CATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAA
AAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTC
TTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCT
GAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGT
CTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC

consensusID : consensus_3922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAGTTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA]

[+] EMBL CD136115             [TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAGTTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA]




>consensus_3922#1
TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATC
TAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAG
TTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGA
GTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCA
GATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCA
CGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3922#0      AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGT 60
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      GCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCA 120
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      AGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTT 180
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      ATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAA 240
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      AAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCT-TTGTCATCAGGTG 299
consensus_3922#1      ----TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTG 56
                            **    *  *  * *** * *      * **  * ****   ************

consensus_3922#0      GCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGA 359
consensus_3922#1      -CATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGG 115
                       ********* *  * * ***** *********************************** 

consensus_3922#0      AAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGT 419
consensus_3922#1      AAAAGTTTGGCGTTGGGGG-CAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGT 174
                      ******************* **************** ***********************

consensus_3922#0      CTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATC 479
consensus_3922#1      CTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATC 234
                      ************************************************************

consensus_3922#0      TGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTG 539
consensus_3922#1      TGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTG 294
                      ************* *********** **********************************

consensus_3922#0      TCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC---- 582
consensus_3922#1      TCTGCACGTGT-GCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA 340
                      ******* *** *********** *******************