cluster # 3951

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Schistosoma mansoni
cluster # 3951 cluster # 3951 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3951#0 length = 585 sequences # 1

consensus_3951#1 length = 581 sequences # 1

consensusID : consensus_3951#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [TTTCGGCGAAAAACTGGAACATTGCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAATTTATTAAAGGGTCGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCTGTTTCAAAAAAGAAGAATCATCTACTGGAAGATGAAAAATGGGCGGGAGAAAAAATAAAAAAAGGAATCAGTCAACTAGCAGTTGGGTTGTATTCATTGGTTACTTTAACTGTTATGATTACATAAACATTTAGTTTAACAACGTCACTTATTGCAGAGTATTATCAATCATGCTTCGATTGACCTGTAACTAGATAGAAAACAATACTTTGTAGTATTATGTTGAAA]

[+] EMBL AW146531             [TTTCGGCGAAAAACTGGAACATTGCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAATTTATTAAAGGGTCGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCTGTTTCAAAAAAGAAGAATCATCTACTGGAAGATGAAAAATGGGCGGGAGAAAAAATAAAAAAAGGAATCAGTCAACTAGCAGTTGGGTTGTATTCATTGGTTACTTTAACTGTTATGATTACATAAACATTTAGTTTAACAACGTCACTTATTGCAGAGTATTATCAATCATGCTTCGATTGACCTGTAACTAGATAGAAAACAATACTTTGTAGTATTATGTTGAAA]




>consensus_3951#0
TTTCGGCGAAAAACTGGAACATTGCAGATAATAAATTTAAATTCTAAAAAAGACAGAATT
GAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCAT
GAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTA
AATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAATTTATT
AAAGGGTCGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATG
AATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCTGTT
TCAAAAAAGAAGAATCATCTACTGGAAGATGAAAAATGGGCGGGAGAAAAAATAAAAAAA
GGAATCAGTCAACTAGCAGTTGGGTTGTATTCATTGGTTACTTTAACTGTTATGATTACA
TAAACATTTAGTTTAACAACGTCACTTATTGCAGAGTATTATCAATCATGCTTCGATTGA
CCTGTAACTAGATAGAAAACAATACTTTGTAGTATTATGTTGAAA

consensusID : consensus_3951#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [AGTGAAACCTTGTCAAAATAAACCCCTCCAATATAAATTTGATAAAAGATACCAGGATGCCCATTTAAAGGCGTTAGCTAAAATGAAATCCACAGTGGATACAACTGCACCAAGAACATTTCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAAATTATTAGAAGGTTGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCAGTTTCAAAAAAGAAGAATCAACTAACTGAAGATGAAAAATGGCGGGAGAAAAAATAAAAAAGGAATCAGTCAACTAGCAGNTGGTTGTATTGCATTGNTACTTTAACTGTTATGATTACATANACAT]

[+] EMBL CD153852             [AGTGAAACCTTGTCAAAATAAACCCCTCCAATATAAATTTGATAAAAGATACCAGGATGCCCATTTAAAGGCGTTAGCTAAAATGAAATCCACAGTGGATACAACTGCACCAAGAACATTTCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAAATTATTAGAAGGTTGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCAGTTTCAAAAAAGAAGAATCAACTAACTGAAGATGAAAAATGGCGGGAGAAAAAATAAAAAAGGAATCAGTCAACTAGCAGNTGGTTGTATTGCATTGNTACTTTAACTGTTATGATTACATANACAT]




>consensus_3951#1
AGTGAAACCTTGTCAAAATAAACCCCTCCAATATAAATTTGATAAAAGATACCAGGATGC
CCATTTAAAGGCGTTAGCTAAAATGAAATCCACAGTGGATACAACTGCACCAAGAACATT
TCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAAT
AACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCAT
AGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGA
AGTCAAACGAGTAACTCAAGAAAATAAAGAAATTATTAGAAGGTTGAAGAATCCAAAAAA
TTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAA
TATATCAAAATTTACTTTGTATCATCAAAAATCAGTTTCAAAAAAGAAGAATCAACTAAC
TGAAGATGAAAAATGGCGGGAGAAAAAATAAAAAAGGAATCAGTCAACTAGCAGNTGGTT
GTATTGCATTGNTACTTTAACTGTTATGATTACATANACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3951#0      ------------------------------------------------------------
consensus_3951#1      AGTGAAACCTTGTCAAAATAAACCCCTCCAATATAAATTTGATAAAAGATACCAGGATGC 60
                                                                                  

consensus_3951#0      -----------------------------TTTCGGCGAAAA--ACTG------GAACATT 23
consensus_3951#1      CCATTTAAAGGCGTTAGCTAAAATGAAATCCACAGTGGATACAACTGCACCAAGAACATT 120
                                                      * * * * *  ****      *******

consensus_3951#0      GCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAAT 83
consensus_3951#1      TCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAAT 180
                       ***********************************************************

consensus_3951#0      AACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCAT 143
consensus_3951#1      AACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCAT 240
                      ************************************************************

consensus_3951#0      AGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGA 203
consensus_3951#1      AGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGA 300
                      ************************************************************

consensus_3951#0      AGTCAAACGAGTAACTCAAGAAAATAAAGAATTTATTAAAGGGTCGAAGAATCCAAAAAA 263
consensus_3951#1      AGTCAAACGAGTAACTCAAGAAAATAAAGAAATTATTAGAAGGTTGAAGAATCCAAAAAA 360
                      ******************************* ****** * *** ***************

consensus_3951#0      TTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAA 323
consensus_3951#1      TTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAA 420
                      ************************************************************

consensus_3951#0      TATATCAAAATTTACTTTGTATCATCAAAAATCTGTTTCAAAAAAGAAGAATCATCTACT 383
consensus_3951#1      TATATCAAAATTTACTTTGTATCATCAAAAATCAGTTTCAAAAAAGAAGAATCAACTAAC 480
                      ********************************* ******************** ***  

consensus_3951#0      GGAAGATGAAAAATGGGCGGGAGAAAAAATAAAAAAAGGAATCAGTCAACTAGCAGTTGG 443
consensus_3951#1      TGAAGATGAAAAATGG-CGGGAGAAAAAATAAAAAA-GGAATCAGTCAACTAGCAGNTGG 538
                       *************** ******************* ******************* ***

consensus_3951#0      GTTGTATTCATTGGTTACTTTAACTGTTATGATTACATAAACATTTAGTTTAACAACGTC 503
consensus_3951#1      -TTGTATTGCATTGNTACTTTAACTGTTATGATTACATANACAT---------------- 581
                       *******   * * ************************ ****                

consensus_3951#0      ACTTATTGCAGAGTATTATCAATCATGCTTCGATTGACCTGTAACTAGATAGAAAACAAT 563
consensus_3951#1      ------------------------------------------------------------
                                                                                  

consensus_3951#0      ACTTTGTAGTATTATGTTGAAA 585
consensus_3951#1      ----------------------