cluster # 396

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Schistosoma mansoni
cluster # 396 cluster # 396 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_396#0 length = 576 sequences # 1

consensus_396#1 length = 179 sequences # 1

consensusID : consensus_396#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CGAATTCCACCCATTGATGATTCGATGGGAAAGTCGATAGTCAGCTGACAAGTAATTTGTTTTGGGCTTGTGAACTTCTTGGGGTGTCCTCGCAAATAATGATGATAATTGATGACAATAGCCCTAAAATGCAAAACGTTAGGAATTCAATTTTCTACTCATTAGGATATTATAAACTTATTGTTATTATTTTCATGATTACTACTGTACGTTTAAAGTTTCCATCTTAATATGAGTACAACAATGTCATTTTGTAATACAGATTCATAGCTGAATTATCAACAAAATAAGAGTACAAATGCTTATAAAACTCATCGTTTTCATTGAATAATTCGATGGTTTTTATGAGTTGACAGGGCAGTGGATATCATGTAGATGTTTGGATTCTAAACAAAAAACACAATGCATTTTTTAAGATTTCATTTTAATCCACTATTTTAGAAGTAATTCCAACATAATTTACATCTATGTTGAAATAAACTTCCATATATAGTAAGCAAAGATGGATAGTGGTTAGCAGTGGAATCCAAGACTCGCGTTTCGTCCTGTTTGGGACTCGTCAGCTGGATATCGAGG]

[+] EMBL CD115349             [CGAATTCCACCCATTGATGATTCGATGGGAAAGTCGATAGTCAGCTGACAAGTAATTTGTTTTGGGCTTGTGAACTTCTTGGGGTGTCCTCGCAAATAATGATGATAATTGATGACAATAGCCCTAAAATGCAAAACGTTAGGAATTCAATTTTCTACTCATTAGGATATTATAAACTTATTGTTATTATTTTCATGATTACTACTGTACGTTTAAAGTTTCCATCTTAATATGAGTACAACAATGTCATTTTGTAATACAGATTCATAGCTGAATTATCAACAAAATAAGAGTACAAATGCTTATAAAACTCATCGTTTTCATTGAATAATTCGATGGTTTTTATGAGTTGACAGGGCAGTGGATATCATGTAGATGTTTGGATTCTAAACAAAAAACACAATGCATTTTTTAAGATTTCATTTTAATCCACTATTTTAGAAGTAATTCCAACATAATTTACATCTATGTTGAAATAAACTTCCATATATAGTAAGCAAAGATGGATAGTGGTTAGCAGTGGAATCCAAGACTCGCGTTTCGTCCTGTTTGGGACTCGTCAGCTGGATATCGAGG]




>consensus_396#0
CGAATTCCACCCATTGATGATTCGATGGGAAAGTCGATAGTCAGCTGACAAGTAATTTGT
TTTGGGCTTGTGAACTTCTTGGGGTGTCCTCGCAAATAATGATGATAATTGATGACAATA
GCCCTAAAATGCAAAACGTTAGGAATTCAATTTTCTACTCATTAGGATATTATAAACTTA
TTGTTATTATTTTCATGATTACTACTGTACGTTTAAAGTTTCCATCTTAATATGAGTACA
ACAATGTCATTTTGTAATACAGATTCATAGCTGAATTATCAACAAAATAAGAGTACAAAT
GCTTATAAAACTCATCGTTTTCATTGAATAATTCGATGGTTTTTATGAGTTGACAGGGCA
GTGGATATCATGTAGATGTTTGGATTCTAAACAAAAAACACAATGCATTTTTTAAGATTT
CATTTTAATCCACTATTTTAGAAGTAATTCCAACATAATTTACATCTATGTTGAAATAAA
CTTCCATATATAGTAAGCAAAGATGGATAGTGGTTAGCAGTGGAATCCAAGACTCGCGTT
TCGTCCTGTTTGGGACTCGTCAGCTGGATATCGAGG

consensusID : consensus_396#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [GTCCTACAGTGACTAGTCAATGTCAGCAGTGCGCATCCACGACCTCGTCTCAGAGTGGACATTTACTCTGAGATACAGGTACATCTAGCTGACGAGTCCCAAATAGGACGAAACGCGTGTCTTGGATTCCACTGCTAGCCACTATCCATCTTTGCTTACCGTATAAGTGTTACAATTGA]

[+] EMBL BG930739             [GTCCTACAGTGACTAGTCAATGTCAGCAGTGCGCATCCACGACCTCGTCTCAGAGTGGACATTTACTCTGAGATACAGGTACATCTAGCTGACGAGTCCCAAATAGGACGAAACGCGTGTCTTGGATTCCACTGCTAGCCACTATCCATCTTTGCTTACCGTATAAGTGTTACAATTGA]




>consensus_396#1
GTCCTACAGTGACTAGTCAATGTCAGCAGTGCGCATCCACGACCTCGTCTCAGAGTGGAC
ATTTACTCTGAGATACAGGTACATCTAGCTGACGAGTCCCAAATAGGACGAAACGCGTGT
CTTGGATTCCACTGCTAGCCACTATCCATCTTTGCTTACCGTATAAGTGTTACAATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_396#0      CGAATTCCACCCATTGATGATTCGATGGGAAAGTCGATAGTCAGCTGACAAGTAATTTGT 60
consensus_396#1      ------------------------------------------------------------
                                                                                 

consensus_396#0      TTTGGGCTTGTGAACTTCTTGGGGTGTCCTCGCAAATAATGATGATAATTGATGACAATA 120
consensus_396#1      ------------------------------------------------------------
                                                                                 

consensus_396#0      GCCCTAAAATGCAAAACGTTAGGAATTCAATTTTCTACTCATTAGGATATTATAAACTTA 180
consensus_396#1      ------------------------------------------------------GTCCTA 6
                                                                             * **

consensus_396#0      TTGTTATTATTTTCATGATTACTACTGTACGTTTAAAGTTTCCATCTTAATATGAGTACA 240
consensus_396#1      CAGTGACTAGT--CAATGTCAGCAGTGCGCATCCACGACCTC-GTCTCAGAGTGGACAT- 62
                       ** * ** *  **   * *  * **  * *  *     **  *** *   **   *  

consensus_396#0      ACAATGTCATTTTGTAATACAGATTCAT--AGCTGAATTATCAACAAAATAAGAGTACAA 298
consensus_396#1      ------TTACTCTGAGATACAGGTACATCTAGCTGACGAGTC--CCAAATAGGACGAAAC 114
                           * * * **  ****** * ***  ******    **  * ***** **  * * 

consensus_396#0      ATGCTTATAAAACTCATCGTTTTCATTGAATAATTCGATGGTTTTTATGAGTTGACAGGG 358
consensus_396#1      GCGTGTCTTGGATTC--CACTGCTAGCCACTATCCATCTTTGCTTACCGTATAAGTGTTA 172
                       *  * *   * **  *  *   *   * **      *    **   *  *        

consensus_396#0      CAGTGGATATCATGTAGATGTTTGGATTCTAAACAAAAAACACAATGCATTTTTTAAGAT 418
consensus_396#1      CAATTGA----------------------------------------------------- 179
                     ** * **                                                     

consensus_396#0      TTCATTTTAATCCACTATTTTAGAAGTAATTCCAACATAATTTACATCTATGTTGAAATA 478
consensus_396#1      ------------------------------------------------------------
                                                                                 

consensus_396#0      AACTTCCATATATAGTAAGCAAAGATGGATAGTGGTTAGCAGTGGAATCCAAGACTCGCG 538
consensus_396#1      ------------------------------------------------------------
                                                                                 

consensus_396#0      TTTCGTCCTGTTTGGGACTCGTCAGCTGGATATCGAGG 576
consensus_396#1      --------------------------------------