These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [TTAACAGTTATTCATATTTTTATTTTCTGATAAAAAAATCCACAATTTTGCTATTTTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAGCTGGAAAGCTCGTGAAGACAAATGGAATTGATTTTATAAATTTCCCGCTCTAATCAGTAATAAGAAATACTGAGTCTTGTACATTGTCCCATTTTCTAAGCTTCTTATCGCAATCTGTATATACAGCCTATATCATGAAAAATGCCACATTCAGTCAAAACTATACTTGTGTGAATTTGTAAATGAATTACTATAAATAGTAGGTCAAGAAAAGTATTTTTTTCTGCATGTTGTTATACCTGAATATCGAATAAACAGATTCATATGTACATAATATCCAACTGCAATTATCAATAACATATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATAGATATTTAATTGTTTTATAATTATGACTTCAATTTGTTATTATAAAGTGTTAGGTTTAACTAAAACAGCTACAGATGAAGAAGTACGTCGTGCA] [+] EMBL CD167021 [TTAACAGTTATTCATATTTTTATTTTCTGATAAAAAAATCCACAATTTTGCTATTTTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAGCTGGAAAGCTCGTGAAGACAAATGGAATTGATTTTATAAATTTCCCGCTCTAATCAGTAATAAGAAATACTGAGTCTTGTACATTGTCCCATTTTCTAAGCTTCTTATCGCAATCTGTATATACAGCCTATATCATGAAAAATGCCACATTCAGTCAAAACTATACTTGTGTGAATTTGTAAATGAATTACTATAAATAGTAGGTCAAGAAAAGTATTTTTTTCTGCATGTTGTTATACCTGAATATCGAATAAACAGATTCATATGTACATAATATCCAACTGCAATTATCAATAACATATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATAGATATTTAATTGTTTTATAATTATGACTTCAATTTGTTATTATAAAGTGTTAGGTTTAACTAAAACAGCTACAGATGAAGAAGTACGTCGTGCA] consensusID : consensus_3975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [ATTTTCTGATAAAAAAATCCACACTTCTTGCTATTTGTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAACTGGAAAGCTCGTGAAGACCACTGGAATTGATTTTATAAATAATATCCAACTGCCATTATCAATACCCTATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATATATATTTAATTG] [+] EMBL CD123041 [ATTTTCTGATAAAAAAATCCACACTTCTTGCTATTTGTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAACTGGAAAGCTCGTGAAGACCACTGGAATTGATTTTATAAATAATATCCAACTGCCATTATCAATACCCTATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATATATATTTAATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3975#0 TTAACAGTTATTCATATTTTTATTTTCTGATAAAAAAATCCACAATT-TTGCTATTT-TC 58 consensus_3975#1 ---------------------ATTTTCTGATAAAAAAATCCACACTTCTTGCTATTTGTC 39 *********************** ** ********* ** consensus_3975#0 TCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAGCTGGAAAGCTCGTGAA 118 consensus_3975#1 TCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAACTGGAAAGCTCGTGAA 99 ******************************************* **************** consensus_3975#0 GACAAATGGAATTGATTTTATAAATT---TCCCGCTCTAATCAGTAATAAGAAATACTGA 175 consensus_3975#1 GACCACTGGAATTGATTTTATAAATAATATCCAACTGCCATTATCAATACCCTATTTATA 159 *** * ******************* *** ** ** * **** ** * consensus_3975#0 GTCTTGTACATTGTCCCATTTTCTAAGCTTCTTATCGCAATCTGTATATACAGCCTATAT 235 consensus_3975#1 G----GAATAGAACTTCAATTGATAA----CACATAACAGA-TATATATTTAATTG---- 206 * * * * ** ** *** * ** ** * ***** * consensus_3975#0 CATGAAAAATGCCACATTCAGTCAAAACTATACTTGTGTGAATTTGTAAATGAATTACTA 295 consensus_3975#1 ------------------------------------------------------------ consensus_3975#0 TAAATAGTAGGTCAAGAAAAGTATTTTTTTCTGCATGTTGTTATACCTGAATATCGAATA 355 consensus_3975#1 ------------------------------------------------------------ consensus_3975#0 AACAGATTCATATGTACATAATATCCAACTGCAATTATCAATAACATATTTATAGGAATA 415 consensus_3975#1 ------------------------------------------------------------ consensus_3975#0 GAACTTCAATTGATAACACATAACAGATAGATATTTAATTGTTTTATAATTATGACTTCA 475 consensus_3975#1 ------------------------------------------------------------ consensus_3975#0 ATTTGTTATTATAAAGTGTTAGGTTTAACTAAAACAGCTACAGATGAAGAAGTACGTCGT 535 consensus_3975#1 ------------------------------------------------------------ consensus_3975#0 GCA 538 consensus_3975#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||