These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TTTTTTTTTTTTTTTTTTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAAATAGATACAACTTTGAATGATTAGATAGAAGCACAGAGGAAACTGAGTTGCATATTAGACATACATATATACATAAAATTAAGCAACTGAATCACAGGTCAAGGAGTCATGACGTATACATGCTGCTTTCCAGACAGCAAGTGACGCTGCTTCTTCAAAGCTGTTGACGGCGATTAACTCTAAACCGCTGTCAGAAATAAGGACTGGGCTTCG] [+] EMBL AI395032 [TTTTTTTTTTTTTTTTTTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAAATAGATACAACTTTGAATGATTAGATAGAAGCACAGAGGAAACTGAGTTGCATATTAGACATACATATATACATAAAATTAAGCAACTGAATCACAGGTCAAGGAGTCATGACGTATACATGCTGCTTTCCAGACAGCAAGTGACGCTGCTTCTTCAAAGCTGTTGACGGCGATTAACTCTAAACCGCTGTCAGAAATAAGGACTGGGCTTCG] consensusID : consensus_3979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [TAAATTATGCATGAGGTTAAAAGATTAGTTCTTATCAAACAATCCAGTCAGTCATATTGAAAAAATGTTTTCCAAACTGTTGACATGCAGAAAGCATGATAAACGGAAAAGTAAAACGAACTCAACTATGTCGCGTGACAAAAACATGAAAAGAAAAATCGTTTGCAATCATATTGAAAACGTTAACTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAANTTGGTACAACT] [+] EMBL AA999602 [TAAATTATGCATGAGGTTAAAAGATTAGTTCTTATCAAACAATCCAGTCAGTCATATTGAAAAAATGTTTTCCAAACTGTTGACATGCAGAAAGCATGATAAACGGAAAAGTAAAACGAACTCAACTATGTCGCGTGACAAAAACATGAAAAGAAAAATCGTTTGCAATCATATTGAAAACGTTAACTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAANTTGGTACAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3979#0 ------------------------------------------------------------ consensus_3979#1 TAAATTATGCATGAGGTTAAAAGATTAGTTCTTATCAAACAATCCAGTCAGTCATATTGA 60 consensus_3979#0 ------------------------------------------------------------ consensus_3979#1 AAAAATGTTTTCCAAACTGTTGACATGCAGAAAGCATGATAAACGGAAAAGTAAAACGAA 120 consensus_3979#0 --------------------------------------------------TTTTTTTTTT 10 consensus_3979#1 CTCAACTATGTCGCGTGACAAAAACATGAAAAGAAAAATCGTTTGCAATCATATTGAAAA 180 * ** consensus_3979#0 TTTTTTTTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAA 70 consensus_3979#1 CGTTAACTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAA 240 ** ***************************************************** consensus_3979#0 AGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACA 130 consensus_3979#1 AGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACA 300 ************************************************************ consensus_3979#0 TTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACG 190 consensus_3979#1 TTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACG 360 ************************************************************ consensus_3979#0 TCGCCAAATAGATACAACTTTGAATGATTAGATAGAAGCACAGAGGAAACTGAGTTGCAT 250 consensus_3979#1 TCGCCAANTTGGTACAACT----------------------------------------- 379 ******* * * ******* consensus_3979#0 ATTAGACATACATATATACATAAAATTAAGCAACTGAATCACAGGTCAAGGAGTCATGAC 310 consensus_3979#1 ------------------------------------------------------------ consensus_3979#0 GTATACATGCTGCTTTCCAGACAGCAAGTGACGCTGCTTCTTCAAAGCTGTTGACGGCGA 370 consensus_3979#1 ------------------------------------------------------------ consensus_3979#0 TTAACTCTAAACCGCTGTCAGAAATAAGGACTGGGCTTCG 410 consensus_3979#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||