These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [AGGGATCAAAGAACTATTAACTTCAACGTGTCAGGAGGTTCTGGGACCTAAGAGGCATAATCATAAGGAATGGATCTCTATGAGAACCCTGGAATAGATTCAAGAAAGGAAGAAAATGACAGCAATTAACGAGTCGAACACGAGCAGAGGAATTCAAGACACAAGCAGAGTACGCAGAAGGAAACAAACAAGTGAAGAAGAGCATCAGAGCCGACAAGCAAATATACATGGGAGAACTAGCAACAACGGCGGAAAAAGCTGCAAGGGAAGGGAATATAGATTAACTTTATTGATACAACGAAGGAACTCTCTGGGAGATATAGCGAACCGGAGAGACCAGTCAAGGACAAAGAAGGGGAGATAATCACGGAGATTCAAGAAGAGAGGGGCAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCTATTGAATCCACCGGACATCGAAGCAGCACACACTGACCTTCCTA] [+] EMBL CD095796 [AGGGATCAAAGAACTATTAACTTCAACGTGTCAGGAGGTTCTGGGACCTAAGAGGCATAATCATAAGGAATGGATCTCTATGAGAACCCTGGAATAGATTCAAGAAAGGAAGAAAATGACAGCAATTAACGAGTCGAACACGAGCAGAGGAATTCAAGACACAAGCAGAGTACGCAGAAGGAAACAAACAAGTGAAGAAGAGCATCAGAGCCGACAAGCAAATATACATGGGAGAACTAGCAACAACGGCGGAAAAAGCTGCAAGGGAAGGGAATATAGATTAACTTTATTGATACAACGAAGGAACTCTCTGGGAGATATAGCGAACCGGAGAGACCAGTCAAGGACAAAGAAGGGGAGATAATCACGGAGATTCAAGAAGAGAGGGGCAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCTATTGAATCCACCGGACATCGAAGCAGCACACACTGACCTTCCTA] consensusID : consensus_408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [ATCAATCGTATTTGTACTAGAGATACTATTGAGGTAGAGACGAAGCTCTTAACTGATACGTCAATGAATAATGGTTATTCATTAAAGTTCATAAACCGCTGGAAGGGTTGCAATACAATTAGACCTATGAAGCTTCTGGCATCCAAAAAGCGATTTTACATTATGTTACCATTTAGGGGCGACTCAAATAGTCTCATGTTCAAACGGAGACTGAAATTAGCCATCAACAAGACATTATATACATCCCAACTCGTCATTACTGAAAAGACAAGGTCTATGTTTCACGAAAAACCCAAACAGCACGTGAGCGATCGTGTTACACTCCATTGTGTCTATCATTTTACATGTATGTACGGAAACACAAACATACGTAGGAGCATGCGT] [+] EMBL CD062051 [ATCAATCGTATTTGTACTAGAGATACTATTGAGGTAGAGACGAAGCTCTTAACTGATACGTCAATGAATAATGGTTATTCATTAAAGTTCATAAACCGCTGGAAGGGTTGCAATACAATTAGACCTATGAAGCTTCTGGCATCCAAAAAGCGATTTTACATTATGTTACCATTTAGGGGCGACTCAAATAGTCTCATGTTCAAACGGAGACTGAAATTAGCCATCAACAAGACATTATATACATCCCAACTCGTCATTACTGAAAAGACAAGGTCTATGTTTCACGAAAAACCCAAACAGCACGTGAGCGATCGTGTTACACTCCATTGTGTCTATCATTTTACATGTATGTACGGAAACACAAACATACGTAGGAGCATGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_408#0 AGGGATCAAAGAACTATTAACTTCAACGTGTCAGGAGGTTCTGGGACCTAAGAGGCATAA 60 consensus_408#1 -----------------------------------------------------------A 1 * consensus_408#0 TCATAAGGAATGGATCTCTATGAGAACCCTGGAATAGATTCAAGAAAGGAAGAAAATGAC 120 consensus_408#1 TCA-ATCGTATTTGTACTAGAGATACTATTGAGGTAGAGACGAAGCTCTTAACTGAT-AC 59 *** * * ** * ** * ** **** * * * ** ** consensus_408#0 AGCAATTAACGAGTCGAACACGAGCAGAGGAATTCAAGACACAAGCAGAGTACGCAGAAG 180 consensus_408#1 GTCAATGAATAA--TGGTTATTCATTAAAGTTCATAAACCGCTGGAAGGGT-TGCAATAC 116 **** ** * * * * * ** * * * ** ** *** * consensus_408#0 GAAACAAACAAGTGAAGAAGAGCATCAGAGCCGACAAGCAAATATACATGGGAGAACTAG 240 consensus_408#1 -AATTAGACCTATGAAGC---TTCTGGCATCCAAAAAGCGATTTTACATTATGTTACCAT 172 ** * ** ***** * * ** * **** * * ***** ** * consensus_408#0 C-AACAACGGCGGAAAAAGCTGCAAGGGAAGGGAATATAGATTAACTTTATTGATACAAC 299 consensus_408#1 TTAGGGGCGACTCAAATAGTCTCATGTTCA---AACGGAGACTGAAATTAGCCAT-CAAC 228 * ** * *** ** ** * * ** *** * * *** ** **** consensus_408#0 GAAGGAACTCTCTGGGAGATATAGCGAACCGGAGAGACCAGTCAAGGACAAAGAAGGGGA 359 consensus_408#1 -AAGACATTATAT-----ACATCCCAACTCG------TCATTACTGAAAAGACAAGGTCT 276 *** * * * * * ** * * ** ** * * * * * **** consensus_408#0 GATAATCACGGAGATTCAAGAAGAGAGGGGCAGAATACTTCGAGGAACTGCTGAATAGAC 419 consensus_408#1 ATGTTTCACGAAAAACCCAAACAGCACGTGAGCGATCGTGTTACACTCCATTGTGTCTAT 336 ***** * * * * * * * * ** * * * ** * * consensus_408#0 CAGCTCTATTGAATCCACCGGACATCGAAGCAGCACACACTGACCTTCCTA 470 consensus_408#1 CATTTTACATGTATGTAC-GGAAACACAAACA-TACGTAGGAGCATGCGT- 384 ** * ** ** ** *** * ** ** ** * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||