cluster # 408

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Schistosoma mansoni
cluster # 408 cluster # 408 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_408#0 length = 470 sequences # 1

consensus_408#1 length = 384 sequences # 1

consensusID : consensus_408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [AGGGATCAAAGAACTATTAACTTCAACGTGTCAGGAGGTTCTGGGACCTAAGAGGCATAATCATAAGGAATGGATCTCTATGAGAACCCTGGAATAGATTCAAGAAAGGAAGAAAATGACAGCAATTAACGAGTCGAACACGAGCAGAGGAATTCAAGACACAAGCAGAGTACGCAGAAGGAAACAAACAAGTGAAGAAGAGCATCAGAGCCGACAAGCAAATATACATGGGAGAACTAGCAACAACGGCGGAAAAAGCTGCAAGGGAAGGGAATATAGATTAACTTTATTGATACAACGAAGGAACTCTCTGGGAGATATAGCGAACCGGAGAGACCAGTCAAGGACAAAGAAGGGGAGATAATCACGGAGATTCAAGAAGAGAGGGGCAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCTATTGAATCCACCGGACATCGAAGCAGCACACACTGACCTTCCTA]

[+] EMBL CD095796             [AGGGATCAAAGAACTATTAACTTCAACGTGTCAGGAGGTTCTGGGACCTAAGAGGCATAATCATAAGGAATGGATCTCTATGAGAACCCTGGAATAGATTCAAGAAAGGAAGAAAATGACAGCAATTAACGAGTCGAACACGAGCAGAGGAATTCAAGACACAAGCAGAGTACGCAGAAGGAAACAAACAAGTGAAGAAGAGCATCAGAGCCGACAAGCAAATATACATGGGAGAACTAGCAACAACGGCGGAAAAAGCTGCAAGGGAAGGGAATATAGATTAACTTTATTGATACAACGAAGGAACTCTCTGGGAGATATAGCGAACCGGAGAGACCAGTCAAGGACAAAGAAGGGGAGATAATCACGGAGATTCAAGAAGAGAGGGGCAGAATACTTCGAGGAACTGCTGAATAGACCAGCTCTATTGAATCCACCGGACATCGAAGCAGCACACACTGACCTTCCTA]




>consensus_408#0
AGGGATCAAAGAACTATTAACTTCAACGTGTCAGGAGGTTCTGGGACCTAAGAGGCATAA
TCATAAGGAATGGATCTCTATGAGAACCCTGGAATAGATTCAAGAAAGGAAGAAAATGAC
AGCAATTAACGAGTCGAACACGAGCAGAGGAATTCAAGACACAAGCAGAGTACGCAGAAG
GAAACAAACAAGTGAAGAAGAGCATCAGAGCCGACAAGCAAATATACATGGGAGAACTAG
CAACAACGGCGGAAAAAGCTGCAAGGGAAGGGAATATAGATTAACTTTATTGATACAACG
AAGGAACTCTCTGGGAGATATAGCGAACCGGAGAGACCAGTCAAGGACAAAGAAGGGGAG
ATAATCACGGAGATTCAAGAAGAGAGGGGCAGAATACTTCGAGGAACTGCTGAATAGACC
AGCTCTATTGAATCCACCGGACATCGAAGCAGCACACACTGACCTTCCTA

consensusID : consensus_408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [ATCAATCGTATTTGTACTAGAGATACTATTGAGGTAGAGACGAAGCTCTTAACTGATACGTCAATGAATAATGGTTATTCATTAAAGTTCATAAACCGCTGGAAGGGTTGCAATACAATTAGACCTATGAAGCTTCTGGCATCCAAAAAGCGATTTTACATTATGTTACCATTTAGGGGCGACTCAAATAGTCTCATGTTCAAACGGAGACTGAAATTAGCCATCAACAAGACATTATATACATCCCAACTCGTCATTACTGAAAAGACAAGGTCTATGTTTCACGAAAAACCCAAACAGCACGTGAGCGATCGTGTTACACTCCATTGTGTCTATCATTTTACATGTATGTACGGAAACACAAACATACGTAGGAGCATGCGT]

[+] EMBL CD062051             [ATCAATCGTATTTGTACTAGAGATACTATTGAGGTAGAGACGAAGCTCTTAACTGATACGTCAATGAATAATGGTTATTCATTAAAGTTCATAAACCGCTGGAAGGGTTGCAATACAATTAGACCTATGAAGCTTCTGGCATCCAAAAAGCGATTTTACATTATGTTACCATTTAGGGGCGACTCAAATAGTCTCATGTTCAAACGGAGACTGAAATTAGCCATCAACAAGACATTATATACATCCCAACTCGTCATTACTGAAAAGACAAGGTCTATGTTTCACGAAAAACCCAAACAGCACGTGAGCGATCGTGTTACACTCCATTGTGTCTATCATTTTACATGTATGTACGGAAACACAAACATACGTAGGAGCATGCGT]




>consensus_408#1
ATCAATCGTATTTGTACTAGAGATACTATTGAGGTAGAGACGAAGCTCTTAACTGATACG
TCAATGAATAATGGTTATTCATTAAAGTTCATAAACCGCTGGAAGGGTTGCAATACAATT
AGACCTATGAAGCTTCTGGCATCCAAAAAGCGATTTTACATTATGTTACCATTTAGGGGC
GACTCAAATAGTCTCATGTTCAAACGGAGACTGAAATTAGCCATCAACAAGACATTATAT
ACATCCCAACTCGTCATTACTGAAAAGACAAGGTCTATGTTTCACGAAAAACCCAAACAG
CACGTGAGCGATCGTGTTACACTCCATTGTGTCTATCATTTTACATGTATGTACGGAAAC
ACAAACATACGTAGGAGCATGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_408#0      AGGGATCAAAGAACTATTAACTTCAACGTGTCAGGAGGTTCTGGGACCTAAGAGGCATAA 60
consensus_408#1      -----------------------------------------------------------A 1
                                                                                *

consensus_408#0      TCATAAGGAATGGATCTCTATGAGAACCCTGGAATAGATTCAAGAAAGGAAGAAAATGAC 120
consensus_408#1      TCA-ATCGTATTTGTACTAGAGATACTATTGAGGTAGAGACGAAGCTCTTAACTGAT-AC 59
                     *** *  * **   *      ** *    **   ****  * *       *    ** **

consensus_408#0      AGCAATTAACGAGTCGAACACGAGCAGAGGAATTCAAGACACAAGCAGAGTACGCAGAAG 180
consensus_408#1      GTCAATGAATAA--TGGTTATTCATTAAAGTTCATAAACCGCTGGAAGGGT-TGCAATAC 116
                       **** **  *   *   *       * *     **  * *  * ** **  ***  * 

consensus_408#0      GAAACAAACAAGTGAAGAAGAGCATCAGAGCCGACAAGCAAATATACATGGGAGAACTAG 240
consensus_408#1      -AATTAGACCTATGAAGC---TTCTGGCATCCAAAAAGCGATTTTACATTATGTTACCAT 172
                      **  * **   *****       *   * ** * **** * * *****      ** * 

consensus_408#0      C-AACAACGGCGGAAAAAGCTGCAAGGGAAGGGAATATAGATTAACTTTATTGATACAAC 299
consensus_408#1      TTAGGGGCGACTCAAATAGTCTCATGTTCA---AACGGAGACTGAAATTAGCCAT-CAAC 228
                       *    ** *  *** **   ** *   *   **   *** * *  ***   ** ****

consensus_408#0      GAAGGAACTCTCTGGGAGATATAGCGAACCGGAGAGACCAGTCAAGGACAAAGAAGGGGA 359
consensus_408#1      -AAGACATTATAT-----ACATCCCAACTCG------TCATTACTGAAAAGACAAGGTCT 276
                      ***  * * * *     * **  * *  **       ** *   * * * * ****   

consensus_408#0      GATAATCACGGAGATTCAAGAAGAGAGGGGCAGAATACTTCGAGGAACTGCTGAATAGAC 419
consensus_408#1      ATGTTTCACGAAAAACCCAAACAGCACGTGAGCGATCGTGTTACACTCCATTGTGTCTAT 336
                          ***** * *  * * *    * * *    **  *   *    *   **  *  * 

consensus_408#0      CAGCTCTATTGAATCCACCGGACATCGAAGCAGCACACACTGACCTTCCTA 470
consensus_408#1      CATTTTACATGTATGTAC-GGAAACACAAACA-TACGTAGGAGCATGCGT- 384
                     **  *    ** **  ** *** *   ** **  **  *    * * * *