These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 780 fasta sequence [GATTGTTGTTTGTTAAATTGTTTTTACGGCTCATATGCGAATTTACACGGAATCATGAAACATGTAAATGACGCCCATAAATGTATCAGAGTAAGAAAGCACGAAAATGCCACTTGCGAAATGTCCACACATAAAATAAAAAAAATTTGTTAAGAACCCAGAAAGCGTTTTTTTGAGGTGACTAACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCTAAAACATAAAGGGTGACAAAAC] [+] EMBL CD075006 [GATTGTTGTTTGTTAAATTGTTTTTACGGCTCATATGCGAATTTACACGGAATCATGAAACATGTAAATGACGCCCATAAATGTATCAGAGTAAGAAAGCACGAAAATGCCACTTGCGAAATGTCCACACATAAAATAAAAAAAATTTGTTAAGAACCCAGAAAGCGTTTTTTTGAGGTGACTAACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCTAAAACATAAAGGGTGACAAAAC] consensusID : consensus_4127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [AACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAGTTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGACNNGT-AGT-ACATCGTATTACATGTTTTAAAAGACGTAACGACTGCTCCCTCGCCAAATGGATCACCATTTTATCCAAAACAGTGGCTACATGTGCAAATCGTTCATAGGTTTGACAGATGTACGCTAGGCCTACTTCATCCAACAACAGTTTCTGCATGATGAAAGTAGCTACAGTCTTGC] [+] EMBL CD131701 [AACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAGTTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGACNNGT AGT ACATCGTAT ] [+] EMBL CD167964 [ GACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGAC GTAAGTAACATCGTATTACATGTTTTAAAAGACGTAACGACTGCTCCCTCGCCAAATGGATCACCATTTTATCCAAAACAGTGGCTACATGTGCAAATCGTTCATAGGTTTGACAGATGTACGCTAGGCCTACTTCATCCAACAACAGTTTCTGCATGATGAAAGTAGCTACAGTCTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4127#0 GATTGTTGTTTGTTAAATTGTTTTTACGGCTCATATGCGAATTTACACGGAATCATGAAA 60 consensus_4127#1 ------------------------------------------------------------ consensus_4127#0 CATGTAAATGACGCCCATAAATGTATCAGAGTAAGAAAGCACGAAAATGCCACTTGCGAA 120 consensus_4127#1 ------------------------------------------------------------ consensus_4127#0 ATGTCCACACATAAAATAAAAAAAATTTGTTAAGAACCCAGAAAGCGTTTTTTTGAGGTG 180 consensus_4127#1 ------------------------------------------------------------ consensus_4127#0 ACTAACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAA 240 consensus_4127#1 ---AACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAA 57 ********************************************************* consensus_4127#0 AAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATA 300 consensus_4127#1 AAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATA 117 ************************************************************ consensus_4127#0 TCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTA 360 consensus_4127#1 TCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTA 177 ************************************************************ consensus_4127#0 CTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACT 420 consensus_4127#1 CTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACT 237 ************************************************************ consensus_4127#0 TGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAA 480 consensus_4127#1 TGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAA 297 ************************************************************ consensus_4127#0 CTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTT 540 consensus_4127#1 CTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTT 357 ************************************************************ consensus_4127#0 CGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGA 600 consensus_4127#1 CGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGA 417 ************************************************************ consensus_4127#0 GTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTA 660 consensus_4127#1 GTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAGTTGTGTA 477 **************************************************** ******* consensus_4127#0 AGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGC 720 consensus_4127#1 AGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGC 537 ************************************************************ consensus_4127#0 TGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTC-TAAAACAT---AAAGGGTGACA 776 consensus_4127#1 TGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGACNNGTA 597 ************************************* * * *** **** * consensus_4127#0 AAAC-------------------------------------------------------- 780 consensus_4127#1 GTACATCGTATTACATGTTTTAAAAGACGTAACGACTGCTCCCTCGCCAAATGGATCACC 657 ** consensus_4127#0 ------------------------------------------------------------ consensus_4127#1 ATTTTATCCAAAACAGTGGCTACATGTGCAAATCGTTCATAGGTTTGACAGATGTACGCT 717 consensus_4127#0 ------------------------------------------------------- consensus_4127#1 AGGCCTACTTCATCCAACAACAGTTTCTGCATGATGAAAGTAGCTACAGTCTTGC 772 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||