These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence [ACGACGNAGNATTAGGTGGACAAACATAAAACTCTTCTCCATCCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATTTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAGCTGTAATGCCAATTAAATTCTCTTTAATGTTCTGCAAAAA] [+] EMBL CD081670 [ACGACGNAGNATTAGGTGGACAAACATAAAACTCTTCTCCATCCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATTTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAGCTGTAATGCCAATTAAATTCTCTTT ] [-] EMBL SM112 [ TTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGC CCTCACTAC CAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCGTACCATTT CGTTTGTGT CCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAGCTGTAATGCCAATTAAATTCTCTTTAATGTTCTGCAAAAA] consensusID : consensus_4139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [AAAAAAACTGGACATGCTTAGATTAGGTGGACAAACAGAAAACTCTTCTCACATTCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATCTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTNTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTCTTGACCTGTCAGAT] [+] EMBL CD130919 [AAAAAAACTGGACATGCTTAGATTAGGTGGACAAACAGAAAACTCTTCTCACATTCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATCTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTNTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTCTTGACCTGTCAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4139#0 -----------ACGACGNAGNATTAGGTGGACAAACATAAAACTCTTCTC-CATCCGTGA 48 consensus_4139#1 AAAAAAACTGGACATGCTTAGATTAGGTGGACAAACAGAAAACTCTTCTCACATTCGTGA 60 ** **************** ************ *** ***** consensus_4139#0 GAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGA 108 consensus_4139#1 GAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGA 120 ************************************************************ consensus_4139#0 TCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCT 168 consensus_4139#1 TCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCT 180 ************************************************************ consensus_4139#0 AGTTCCCGAAAGCATTTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGA 228 consensus_4139#1 AGTTCCCGAAAGCATCTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGA 240 *************** ******************************************** consensus_4139#0 TGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCT 288 consensus_4139#1 TGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCT 300 ************************************************************ consensus_4139#0 TTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTG 348 consensus_4139#1 TTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTG 360 ************************************************************ consensus_4139#0 TGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAG 408 consensus_4139#1 TGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAG 420 ************************************************************ consensus_4139#0 TTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAA 468 consensus_4139#1 TTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAA 480 ************************************************************ consensus_4139#0 ATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCG 528 consensus_4139#1 ATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTNTTTCCCAGTCAGCCTGTTTTTCG 540 ************************************ *********************** consensus_4139#0 TACCATTTACGTTTGTGTACCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAG 588 consensus_4139#1 TACCATTTACGTTTGTGTACCCGTCTTGACCTGTCAGAT--------------------- 579 ************************ ************** consensus_4139#0 CTGTAATGCCAATTAAATTCTCTTTAATGTTCTGCAAAAA 628 consensus_4139#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||