cluster # 4156

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Schistosoma mansoni
cluster # 4156 cluster # 4156 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4156#0 length = 871 sequences # 2

consensus_4156#1 length = 559 sequences # 1

consensusID : consensus_4156#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 871
fasta sequence

                              [CAATCGATAGAGATGATGGTGATGGATGCTCGGCGAATAAAGCAAATAATGGAGAGATCACAGCAACCACTACTACTACTACTGGCTCCGGTGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAACGAAGGAGGAAGGAAATCTAACAGCTGGAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTCTGTTAAATATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAATTATAATAAACGTCAAATGAGTAGAATTTATCCTAGAGGAAATCGTGTCGATTCAAGCAATTATATGCCACAAATATTTTGGAATGCTGGTTGTCAAATGGTTGCGTTGAATTTTCAAACCCCCGATTTAGCCATGCAGTTGAACCAAGGGAAGTTCGAATACAATGGTAATTGTGGTTATTTACTAAAACCGGAATTTATGCGACGTCCAGAGCGTCAGTTTGATCCATTCTCTGAGTCCCCAATGGATGGTGTTATTGCAGCTACATGTGAAGTGAAAATTATATCAGGACAATTTTTATCAGATCGTAAAGTTGGCACATATGTTGAAGTAGATATGTATGGTTTACCAACAGATACAATTCGTAAAGAATTTCGCACTCGAGTTGTCCCTAATAATGGATTAAATCCAGTGTATGGAGATGATGCTGTTTTTGTATTTAGAAA]

[+] EMBL CD111423             [CAATCGATAGAGATGATGGTGATGGATGCTCGGCGAATAAAGCAAATAATGGAGAGATCACAGCAACCACTACTACTACTACTGGCTCCGGTGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAACGAAGGAGGAAGGAAATCTAACAGCTGGAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTCTGTTAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD066092             [                                                                                                                                                                                                                                           TCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAATTATAATAAACGTCAAATGAGTAGAATTTATCCTAGAGGAAATCGTGTCGATTCAAGCAATTATATGCCACAAATATTTTGGAATGCTGGTTGTCAAATGGTTGCGTTGAATTTTCAAACCCCCGATTTAGCCATGCAGTTGAACCAAGGGAAGTTCGAATACAATGGTAATTGTGGTTATTTACTAAAACCGGAATTTATGCGACGTCCAGAGCGTCAGTTTGATCCATTCTCTGAGTCCCCAATGGATGGTGTTATTGCAGCTACATGTGAAGTGAAAATTATATCAGGACAATTTTTATCAGATCGTAAAGTTGGCACATATGTTGAAGTAGATATGTATGGTTTACCAACAGATACAATTCGTAAAGAATTTCGCACTCGAGTTGTCCCTAATAATGGATTAAATCCAGTGTATGGAGATGATGCTGTTTTTGTATTTAGAAA]




>consensus_4156#0
CAATCGATAGAGATGATGGTGATGGATGCTCGGCGAATAAAGCAAATAATGGAGAGATCA
CAGCAACCACTACTACTACTACTGGCTCCGGTGGTGGGGGTGATACTGTAATACCTCTGA
ATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTAC
AATTAACGAAGGAGGAAGGAAATCTAACAGCTGGAGAAGAACAAATAATGATGGCTCATT
ATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTCTGTTAAATATG
CACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATA
TGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTG
TCAATTATAATAAACGTCAAATGAGTAGAATTTATCCTAGAGGAAATCGTGTCGATTCAA
GCAATTATATGCCACAAATATTTTGGAATGCTGGTTGTCAAATGGTTGCGTTGAATTTTC
AAACCCCCGATTTAGCCATGCAGTTGAACCAAGGGAAGTTCGAATACAATGGTAATTGTG
GTTATTTACTAAAACCGGAATTTATGCGACGTCCAGAGCGTCAGTTTGATCCATTCTCTG
AGTCCCCAATGGATGGTGTTATTGCAGCTACATGTGAAGTGAAAATTATATCAGGACAAT
TTTTATCAGATCGTAAAGTTGGCACATATGTTGAAGTAGATATGTATGGTTTACCAACAG
ATACAATTCGTAAAGAATTTCGCACTCGAGTTGTCCCTAATAATGGATTAAATCCAGTGT
ATGGAGATGATGCTGTTTTTGTATTTAGAAA

consensusID : consensus_4156#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [TGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAAAGAAGGAGGAAGGAAATTTAACAGCTGAAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAAGTATCCTATTCACTTGATAAGAAAACAGTTTCATGTCATTATTGTCATTTTATTTTGTTTTGAAAAAAAACGAAAGTTTTTCGAGTGTACTTCTGTTAATATTTGCACGCATCTACGTTGTTATTGTAAGGTTTTATTTTAGTACTGCATGTTATATTGTTATCTATTATTTATCGGAATGTTTCAACTAATTCTAATAGGAAGATGTGTATCTGTACCTTGGAGA]

[+] EMBL CD187839             [TGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTACAATTAAAGAAGGAGGAAGGAAATTTAACAGCTGAAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATGCACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTGTCAAGTATCCTATTCACTTGATAAGAAAACAGTTTCATGTCATTATTGTCATTTTATTTTGTTTTGAAAAAAAACGAAAGTTTTTCGAGTGTACTTCTGTTAATATTTGCACGCATCTACGTTGTTATTGTAAGGTTTTATTTTAGTACTGCATGTTATATTGTTATCTATTATTTATCGGAATGTTTCAACTAATTCTAATAGGAAGATGTGTATCTGTACCTTGGAGA]




>consensus_4156#1
TGGTGGGGGTGATACTGTAATACCTCTGAATACAACACCTACTCCACAGTTGGTTAGTTG
TACTTCTAGTGCTGAATTGAAAAGACTACAATTAAAGAAGGAGGAAGGAAATTTAACAGC
TGAAGAAGAACAAATAATGATGGCTCATTATCATTATACTGGTGCAACAAGTAGTATACA
TCCATTATTATCATCGTTTGTTAATTATGCACAACCTGTAAAATTTCAAGGATTTGATGT
TGCAGAAGACGAGAATATTCATCATCATATGTCTTCATTCAGTGAAACAGTGGCATTGGG
ATTGTTAAAGAATCAAGCAATAGAATTTGTCAAGTATCCTATTCACTTGATAAGAAAACA
GTTTCATGTCATTATTGTCATTTTATTTTGTTTTGAAAAAAAACGAAAGTTTTTCGAGTG
TACTTCTGTTAATATTTGCACGCATCTACGTTGTTATTGTAAGGTTTTATTTTAGTACTG
CATGTTATATTGTTATCTATTATTTATCGGAATGTTTCAACTAATTCTAATAGGAAGATG
TGTATCTGTACCTTGGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4156#0      CAATCGATAGAGATGATGGTGATGGATGCTCGGCGAATAAAGCAAATAATGGAGAGATCA 60
consensus_4156#1      ------------------------------------------------------------
                                                                                  

consensus_4156#0      CAGCAACCACTACTACTACTACTGGCTCCGGTGGTGGGGGTGATACTGTAATACCTCTGA 120
consensus_4156#1      -------------------------------TGGTGGGGGTGATACTGTAATACCTCTGA 29
                                                     *****************************

consensus_4156#0      ATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTAC 180
consensus_4156#1      ATACAACACCTACTCCACAGTTGGTTAGTTGTACTTCTAGTGCTGAATTGAAAAGACTAC 89
                      ************************************************************

consensus_4156#0      AATTAACGAAGGAGGAAGGAAATCTAACAGCTGGAGAAGAACAAATAATGATGGCTCATT 240
consensus_4156#1      AATTAAAGAAGGAGGAAGGAAATTTAACAGCTGAAGAAGAACAAATAATGATGGCTCATT 149
                      ****** **************** ********* **************************

consensus_4156#0      ATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTCTGTTAAATATG 300
consensus_4156#1      ATCATTATACTGGTGCAACAAGTAGTATACATCCATTATTATCATCGTTTGTTAATTATG 209
                      ************************************************ ****** ****

consensus_4156#0      CACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATA 360
consensus_4156#1      CACAACCTGTAAAATTTCAAGGATTTGATGTTGCAGAAGACGAGAATATTCATCATCATA 269
                      ************************************************************

consensus_4156#0      TGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTG 420
consensus_4156#1      TGTCTTCATTCAGTGAAACAGTGGCATTGGGATTGTTAAAGAATCAAGCAATAGAATTTG 329
                      ************************************************************

consensus_4156#0      TCAATTATAATAAACGTCAAATGAGTAGAATTTATCCTAGAGGAA--ATCGTGTCGATTC 478
consensus_4156#1      TCAAGTATCCTATTCACTTGATAAGAAAACAGTTTCATGTCATTATTGTCATTTTATTTT 389
                      **** ***  **  *     ** ** * *   * ** *      *   ** * *   ** 

consensus_4156#0      AAGCAATTATATGCCACAAATATTTTGGAATGCTGGTTGTCAAATGGTTGCGTTGAATTT 538
consensus_4156#1      GTTTTGAAAAAAAACGAAAGT-TTTTCGAGTGTACTTCTGTTAATATTTGCA-------- 440
                              * *   *  ** * **** ** **    *     ***  ****         

consensus_4156#0      TCAAACCCCCGATTTAGCCATGCAGTTGAACCAAGGGAAGTTCGAATACAATGGTAATTG 598
consensus_4156#1      -CGCATCTACGTTGTTATTGTAAGGTTTTATTTTAGTA---CTGCATGTTATATTGTTAT 496
                       *  * *  ** * *     *   ***  *     * *     * **   **  *  *  

consensus_4156#0      TGGTTATTTACTAAAACCGGAATTTATGCGACGTCCAGAGCGTCAGTTTG-ATCCATTCT 657
consensus_4156#1      CTATTATTTATCGGAAT----GTTTCAACTAATTCTAATAGGAAGATGTGTATCTGTACC 552
                         *******    **      ***   * *  ** *    *    * ** ***  * * 

consensus_4156#0      CTGAGTCCCCAATGGATGGTGTTATTGCAGCTACATGTGAAGTGAAAATTATATCAGGAC 717
consensus_4156#1      TTGGAGA----------------------------------------------------- 559
                       **                                                         

consensus_4156#0      AATTTTTATCAGATCGTAAAGTTGGCACATATGTTGAAGTAGATATGTATGGTTTACCAA 777
consensus_4156#1      ------------------------------------------------------------
                                                                                  

consensus_4156#0      CAGATACAATTCGTAAAGAATTTCGCACTCGAGTTGTCCCTAATAATGGATTAAATCCAG 837
consensus_4156#1      ------------------------------------------------------------
                                                                                  

consensus_4156#0      TGTATGGAGATGATGCTGTTTTTGTATTTAGAAA 871
consensus_4156#1      ----------------------------------